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BioLiP
>protein
VEVLLGGGDGSLAFLPGDFSVASGEEIVFCNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGECYKVTLTEKGTY
KFYCSPHQGAGMVGKVTVN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ag6:A 99 99 0.9697 0.9697 0.9697 6.75e-66 1oow:A, 2pcf:A, 1tef:A, 1tef:B, 1teg:A, 1teg:B, 1ylb:B
2 9pcy:A 99 99 0.8182 0.8182 0.8182 2.17e-55
3 6yez:P 99 99 0.7879 0.7879 0.7879 8.95e-54 6zoo:P
4 1byo:A 99 98 0.7778 0.7778 0.7857 1.33e-53 1byo:B, 1byp:A
5 4dp0:X 99 99 0.7475 0.7475 0.7475 2.09e-51 4dp1:X, 4dp2:X, 4dp4:X, 4dp5:X, 4dp6:X
6 1jxg:A 100 99 0.7475 0.7400 0.7475 1.18e-50 4dp7:X, 4dp8:X, 4dp9:X, 4dpa:X, 4dpb:X, 4dpc:X, 1jxg:B, 3pcy:A, 4pcy:A, 5pcy:A, 6pcy:A, 1plc:A, 1pnc:A, 1pnd:A, 1tkw:A
7 1pla:A 97 98 0.6768 0.6907 0.6837 2.10e-43 1plb:A
8 2plt:A 98 97 0.5859 0.5918 0.5979 3.23e-37 7zqe:M
9 7pcy:A 98 97 0.5657 0.5714 0.5773 1.12e-33
10 1iuz:A 98 97 0.5657 0.5714 0.5773 6.18e-33
11 1j5c:A 98 98 0.4545 0.4592 0.4592 1.47e-23 1j5d:A, 1jxd:A, 1jxf:A, 1pcs:A
12 4r0o:A 106 99 0.3939 0.3679 0.3939 8.17e-23 1baw:A, 1baw:B, 1baw:C, 3bqv:A, 3cvb:A, 3cvb:B, 3cvc:A, 3cvd:A, 3cvd:B, 3cvd:C, 2q5b:A, 2q5b:B, 2q5b:C, 4r0o:B, 4r0o:C, 4r0o:D, 2w88:A, 2w88:B, 2w88:C, 2w8c:A, 2w8c:B
13 1bxu:A 91 99 0.3838 0.4176 0.3838 1.38e-21 1bxv:A
14 1b3i:A 97 98 0.4141 0.4227 0.4184 5.50e-21 2b3i:A, 2jxm:A
15 2gim:A 106 100 0.4545 0.4245 0.4500 6.13e-21 2cj3:A, 2cj3:B, 1fa4:A, 2gim:C, 1nin:A, 1tu2:A
16 2bz7:A 102 104 0.3838 0.3725 0.3654 3.47e-16 2bzc:A, 1kdi:A, 1kdj:A
17 6akn:A 124 99 0.3939 0.3145 0.3939 2.24e-12 6akn:B, 1bqk:A, 1bqr:A, 8hm9:A, 8hm9:B, 6ifp:A, 6ifp:C, 2jkw:A, 2jkw:B, 2ux6:A, 2ux7:A, 2uxf:A, 2uxg:A, 5wv4:A, 5wv4:B, 5xmo:A, 5y23:A, 5y23:B, 4yl4:A, 5ysg:A, 5ysg:B, 5ysg:C, 5ysg:D, 5yw3:A, 5yw3:B, 5yw3:C, 5yw3:D, 5z0x:A, 5z0x:B, 1zia:A, 1zib:A, 5ztd:A, 5ztd:B
18 3c75:A 106 91 0.2828 0.2642 0.3077 1.58e-08 3c75:B, 1id2:A, 1id2:B, 1id2:C
19 1adw:A 123 98 0.3333 0.2683 0.3367 6.16e-08 1adw:B, 4bwt:A, 4bwt:B, 4bwu:A, 4bwu:B, 4bxv:A, 4bxv:B, 3erx:A, 3erx:B
20 3tu6:A 127 100 0.3131 0.2441 0.3100 2.90e-07
21 8k9n:A 125 99 0.2929 0.2320 0.2929 3.08e-07 8k9p:A, 3nyk:A, 2p80:D, 1paz:A, 3paz:A, 4paz:A, 5paz:A, 6paz:A, 7paz:A, 8paz:A, 1py0:A, 1pza:A, 1pzb:A, 4rh4:A, 5x31:A, 5x31:B
22 1aac:A 105 81 0.2727 0.2571 0.3333 2.78e-06 1aan:A, 1bxa:A, 2gb2:A, 2gba:A, 2gc4:C, 2gc4:G, 2gc4:K, 2gc4:O, 2idq:A, 2ids:A, 2idt:A, 2idu:A, 3ie9:A, 3iea:A, 2j55:A, 2j55:B, 2j56:A, 2j56:B, 2j57:A, 2j57:B, 2j57:C, 2j57:D, 3l45:A, 1mda:A, 1mda:B, 1mg2:C, 1mg2:G, 1mg2:K, 1mg2:O, 1mg3:C, 1mg3:G, 1mg3:K, 1mg3:O, 2mta:A, 2ov0:A, 4p5r:A, 4p5s:A, 3ply:A, 3ply:B, 3ply:C, 3ply:D, 2qdv:A, 2qdw:A, 2rac:A, 3rym:A, 3rym:C, 3rym:B, 3rym:D, 1sf3:A, 1sf5:A, 1sfd:A, 1sfd:B, 1sfh:A, 1sfh:B, 1t5k:A, 1t5k:B, 1t5k:C, 1t5k:D
23 1pmy:A 123 99 0.3030 0.2439 0.3030 8.31e-05
24 5b1j:C 124 88 0.2828 0.2258 0.3182 3.28e-04 3ef4:A, 3ef4:B, 3ef4:C
25 5fc9:A 95 85 0.2424 0.2526 0.2824 0.001 5fc9:B, 5fc9:C, 5fc9:D
26 6hbe:C 427 81 0.2424 0.0562 0.2963 0.44 6hbe:A, 6hbe:B
27 4b4o:A 295 67 0.2020 0.0678 0.2985 1.3 4b4o:B, 4b4o:C, 4b4o:D, 4b4o:E, 4b4o:F, 4b4o:G, 4b4o:H
28 2rau:A 350 25 0.1212 0.0343 0.4800 2.9
29 4hcf:B 96 40 0.1515 0.1562 0.3750 4.3 4hcf:A, 4hcg:A, 4hcg:B
30 7x5j:C 256 40 0.1515 0.0586 0.3750 5.7 7x5j:D, 7x5j:A, 7x5j:E, 7x5j:B, 7x5j:F
31 2grj:A 179 55 0.1515 0.0838 0.2727 6.3 2grj:B, 2grj:C, 2grj:D, 2grj:E, 2grj:F, 2grj:G, 2grj:H
32 8xdo:A 242 36 0.1313 0.0537 0.3611 7.3 8uke:A, 8uke:C, 8uke:B, 8uke:D, 8uke:E, 8uke:F, 8xdo:B, 8xdp:A, 8xdp:B, 8xdq:A, 8xdq:B, 8xdr:A, 8xdr:B, 8xds:A, 8xds:B, 8xdt:A, 8xdt:B, 8xdu:A, 8xdu:B, 8xdv:A, 8xdv:B, 8xdy:A, 8xdy:B, 8xe0:A, 8xe0:B, 8xe2:A, 8xe2:B, 8xe2:C, 8xe2:D, 8xe3:A, 8xe3:B, 8xe4:A, 8xe4:B, 8xe4:C, 8xe4:D, 8xe5:A, 8xe5:B, 8xe5:C, 8xe5:D, 8z8o:A, 8z8o:B, 8z8o:C, 8z8o:D, 8z8p:A, 8z8p:B, 8z8p:C, 8z8p:D, 8z8r:A, 8z8r:B, 8z8r:C, 8z8r:D, 8z8s:A, 8z8s:B, 8zfw:A, 8zfw:B
33 2q9u:A 409 29 0.1010 0.0244 0.3448 8.2 2q9u:B
34 7syv:x 627 48 0.1818 0.0287 0.3750 9.3 8pj3:0, 8pj4:0, 8pj5:0, 7syw:x, 7syx:x, 7tql:1, 4ujc:AB, 4ujd:BB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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