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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VEVEHWNTLRLRIYIGENDKWEGRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSTDLPIIVEVVDRGHNIEKVVNVIKP
MIKDGMITVEPTIVLWVG

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2dcl:A 99 98 0.9694 0.9596 0.9694 8.62e-62 2dcl:C, 2dcl:B
2 1o51:A 89 77 0.3469 0.3820 0.4416 8.68e-17
3 6es9:A 545 40 0.1224 0.0220 0.3000 0.39 6es9:B
4 5ntg:A 512 64 0.2143 0.0410 0.3281 3.4 5ntg:B
5 7xaq:B 201 47 0.1327 0.0647 0.2766 3.7 8hjb:A, 7xaq:D, 7xaq:H, 7xaq:A, 7xaq:G, 7xaq:C
6 4j6o:A 261 69 0.2041 0.0766 0.2899 4.6 4j6o:B
7 3avt:A 1203 30 0.1327 0.0108 0.4333 5.8 7abz:6, 5afi:z, 3agp:A, 3agq:A, 3avu:A, 3avv:A, 3avw:A, 3avx:A, 3avy:A, 7bbn:A, 7bbn:B, 2bvn:A, 2bvn:B, 1efm:A, 1etu:A, 4fwt:A, 2hcj:A, 2hcj:B, 2hdn:A, 2hdn:B, 2hdn:C, 2hdn:D, 2hdn:E, 2hdn:F, 2hdn:G, 2hdn:H, 2hdn:I, 2hdn:J, 2hdn:K, 2hdn:L, 5i4r:C, 5i4r:D, 5i4r:G, 5i4r:H, 3mmp:G, 5opd:A, 5opd:B, 4pc2:A, 4pc2:B, 4pc3:A, 4pc3:B, 4pc6:A, 4pc6:B, 4pc7:A, 3u6b:B, 3u6b:A, 3vnu:A, 3vnv:A, 6wd4:8, 6wd7:8, 6wd9:8, 6wda:8
8 2ckf:E 433 40 0.1633 0.0370 0.4000 6.7 2ckf:C
9 2gbw:A 449 40 0.1633 0.0356 0.4000 7.0 2ckf:A, 2gbw:C, 2gbw:E, 2gbx:A, 2gbx:C, 2gbx:E
10 5ups:A 520 69 0.1429 0.0269 0.2029 9.0 5upq:A, 5upq:B, 5ups:B, 5upt:A
11 3pya:A 688 16 0.0918 0.0131 0.5625 9.1 4lix:A, 3pyb:A
12 7plm:A 1177 44 0.1429 0.0119 0.3182 9.2 7plm:B
13 1b0p:A 1231 44 0.1429 0.0114 0.3182 9.2 1b0p:B, 2c3m:A, 2c3m:B, 2c3o:A, 2c3o:B, 2c3p:A, 2c3p:B, 2c3u:A, 2c3u:B, 2c3y:A, 2c3y:B, 2c42:A, 2c42:B, 1kek:A, 1kek:B, 2pda:A, 2pda:B, 2uza:A, 2uza:B
14 2e2l:A 317 49 0.1531 0.0473 0.3061 9.4 2e2l:C, 2e2l:F
15 2byj:A 404 46 0.1429 0.0347 0.3043 9.6 2byj:B, 2byj:C, 2byl:A, 2byl:B, 2byl:C, 2can:A, 2can:B, 2can:C, 8ez1:A, 8ez1:B, 8ez1:C, 1gbn:A, 1gbn:B, 1gbn:C, 6hx7:A, 6hx7:B, 6hx7:C, 7jx9:A, 7jx9:B, 7jx9:C, 7lk0:A, 7lk0:B, 7lk0:C, 7lk1:A, 7lk1:B, 7lk1:C, 7lnm:B, 7lnm:C, 7lnm:E, 7lnm:F, 7lnm:I, 7lnm:J, 7lom:A, 7lom:B, 7lom:C, 7lon:B, 7lon:A, 7lon:C, 1oat:A, 1oat:B, 1oat:C, 2oat:A, 2oat:B, 2oat:C, 6oia:A, 6oia:B, 6oia:C, 7t9z:A, 7t9z:B, 7t9z:C, 7ta0:A, 7ta0:B, 7ta0:C, 7ta1:A, 7ta1:B, 7ta1:C, 7ta1:D, 7ta1:E, 7ta1:F, 7ted:A, 7ted:B, 7ted:C, 7ted:I, 7ted:D, 7ted:E, 7ted:F, 7ted:G, 7ted:H, 7tev:A, 7tev:B, 7tev:C, 7tfp:A, 7tfp:B, 7tfp:C, 6v8c:A, 6v8c:B, 6v8c:C, 6v8d:A, 6v8d:B, 6v8d:C, 8v9m:A, 8v9m:B, 8v9m:C, 5vwo:A, 5vwo:B, 5vwo:C
16 5k8b:A 394 32 0.1020 0.0254 0.3125 9.9 5k8b:B, 5k8b:C, 5k8b:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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