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BioLiP
>protein
VEVEHWNTLRLRIYIGENDKWEGRPLYKVIVEKLREMGIAGATVYRGIYGFGKIRLSTDLPIIVEVVDRGHNIEKVVNVI
KPMIKDGMITVEPTIVL

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2dcl:A 99 97 0.9485 0.9293 0.9485 3.87e-59 2dcl:C, 2dcl:B
2 1o51:A 89 79 0.3505 0.3820 0.4304 1.90e-16
3 7mfm:G 1483 60 0.1856 0.0121 0.3000 5.2 7mfm:H, 7mft:G
4 6mfv:A 641 43 0.1649 0.0250 0.3721 6.3 6mfv:B, 6mfv:C, 6mfv:D
5 6es9:A 545 42 0.1340 0.0239 0.3095 7.7 6es9:B
6 3pya:A 688 16 0.0928 0.0131 0.5625 7.9 4lix:A, 3pyb:A
7 5ups:A 520 38 0.1031 0.0192 0.2632 8.5 5upq:A, 5upq:B, 5ups:B, 5upt:A
8 2vl4:B 841 47 0.1649 0.0190 0.3404 8.8 7op6:A, 7op6:B, 7op7:A, 7op7:B, 2vjx:A, 2vjx:B, 2vl4:A, 2vmf:A, 2vmf:B, 2vo5:A, 2vo5:B, 2vot:A, 2vot:B, 2vqt:A, 2vqt:B, 2vqu:A, 2vqu:B, 2vr4:A, 2vr4:B, 2wbk:A, 2wbk:B
9 5k8b:A 394 32 0.1031 0.0254 0.3125 9.7 5k8b:B, 5k8b:C, 5k8b:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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