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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGSGIKKDELALALARGEALASISSVSRLTLTSRTAEQQEA
WQAYAVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGG
QKERRLGAILGTAFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYFYVNGRMMRDRLINHAIRQAYEDKLGADQQP
AFVLYLEISRLVHDFIYQGVLSVLQ

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aib:C 267 267 1.0000 0.9925 0.9925 0.0 7aic:C
2 1b63:A 333 312 0.9849 0.7838 0.8365 0.0 1b62:A, 1nhh:A, 1nhi:A, 1nhj:A, 7p8v:A, 7p8v:B
3 4p7a:A 303 266 0.3170 0.2772 0.3158 3.55e-40
4 6lzj:A 245 253 0.3245 0.3510 0.3399 3.23e-35 6lzi:A
5 7rci:A 317 282 0.2528 0.2114 0.2376 3.46e-17 1ea6:A, 1ea6:B, 1h7u:B, 1h7u:A, 7rci:B, 7rck:A, 7rck:B
6 3h4l:B 344 157 0.1887 0.1453 0.3185 1.42e-10 3h4l:A
7 5ofb:B 541 52 0.0755 0.0370 0.3846 0.11 5of9:A, 5of9:B, 5ofa:B, 5ofa:A, 5ofb:A
8 2zbk:B 506 71 0.0943 0.0494 0.3521 0.76 2hkj:A, 1mu5:A, 1mx0:A, 1mx0:B, 1mx0:C, 1mx0:D, 1mx0:E, 1mx0:F, 1z59:A, 1z5a:A, 1z5a:B, 1z5b:A, 1z5b:B, 1z5c:A, 1z5c:B, 2zbk:D, 2zbk:F, 2zbk:H
9 2yww:B 142 87 0.0906 0.1690 0.2759 1.3 2yww:A
10 4hjf:A 263 82 0.0868 0.0875 0.2805 1.7 3u2e:A, 3u2e:B
11 6y8o:A 188 64 0.0755 0.1064 0.3125 2.4 4b6c:A, 4b6c:B, 6y8o:B
12 6zt3:A 394 42 0.0642 0.0431 0.4048 3.2 4bae:A, 4bae:B, 4bae:C, 4bae:D
13 2gzs:A 249 41 0.0528 0.0562 0.3415 3.5
14 3d36:B 221 44 0.0566 0.0679 0.3409 3.6 3d36:A
15 1a82:A 224 40 0.0566 0.0670 0.3750 7.1 1bs1:A, 1dad:A, 1dae:A, 1daf:A, 1dag:A, 1dah:A, 1dai:A, 1dak:A, 1dam:A
16 4hxz:A 366 51 0.0604 0.0437 0.3137 7.4 4hxz:B, 4hy1:A, 4hy1:B, 4hym:A, 4kqv:A, 4kqv:B
17 3un6:A 291 40 0.0528 0.0481 0.3500 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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