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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMNNLS
CMEIDPSAALKDMNDMLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLS
KLLEKFISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAECKRCQAR
WKMQKKYLDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELED

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xtr:B 311 309 0.9900 0.9582 0.9644 0.0 3b2e:A, 3b2e:D, 5bw8:B, 4pwx:A, 4pwx:B, 3vlc:A, 2woj:A, 2woj:B, 2woj:D, 4xtr:A, 4xvu:H, 4xvu:A, 4xvu:B, 4xvu:G, 4xwo:A, 4xwo:G, 4xwo:M, 4xwo:N, 4xwo:S, 4xwo:B, 4xwo:H, 4xwo:T, 3zs8:B, 3zs9:A, 3zs9:B
2 3sja:A 338 336 1.0000 0.8905 0.8958 0.0 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E
3 3sjd:C 292 307 0.9435 0.9726 0.9251 0.0 3sjd:A, 3sjd:B, 2woj:C, 3zs8:A
4 3a36:A 314 327 0.9502 0.9108 0.8746 0.0 3a37:A, 5bwk:N
5 3idq:A 272 298 0.8704 0.9632 0.8792 0.0
6 2woo:A 303 307 0.5748 0.5710 0.5635 1.19e-106 2woo:B, 2woo:C, 2woo:D, 2woo:E, 2woo:F
7 3io3:A 230 300 0.5515 0.7217 0.5533 2.10e-105
8 3ibg:A 300 313 0.5548 0.5567 0.5335 2.53e-104 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
9 8odu:A 291 302 0.5382 0.5567 0.5364 1.55e-99
10 3iqx:A 261 294 0.5150 0.5939 0.5272 4.98e-92 3iqw:A, 3iqw:B, 3iqx:B
11 6so5:A 313 321 0.5150 0.4952 0.4829 3.27e-87 7ru9:A, 7ru9:B, 7rua:A, 7rua:B, 7ruc:A, 7ruc:B
12 7sq0:A 306 306 0.4784 0.4706 0.4706 5.80e-80 7sq0:B
13 7spz:A 328 326 0.4884 0.4482 0.4509 9.25e-79 7spy:A
14 8hac:B 327 337 0.4884 0.4495 0.4362 2.13e-74 8hac:A
15 3zq6:B 288 284 0.3688 0.3854 0.3908 3.93e-49 3zq6:C
16 3zq6:D 307 302 0.3588 0.3518 0.3576 2.26e-45 3zq6:A
17 3ug7:A 317 289 0.3156 0.2997 0.3287 2.25e-44 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D
18 5zme:A 638 290 0.2924 0.1379 0.3034 2.11e-28 5zmf:A
19 5zme:A 638 340 0.3223 0.1520 0.2853 4.92e-25 5zmf:A
20 1ii0:B 553 266 0.2691 0.1465 0.3045 1.32e-26 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
21 1ii0:B 553 294 0.2458 0.1338 0.2517 4.03e-06 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
22 8elf:B 384 198 0.1794 0.1406 0.2727 1.00e-07 8elf:A
23 6bs3:A 330 234 0.1794 0.1636 0.2308 4.83e-07 6bs4:A, 6bs5:A
24 5if9:A 251 179 0.1794 0.2151 0.3017 6.43e-04 5if9:B, 5ihp:A, 5ihp:B
25 2bej:A 245 127 0.1096 0.1347 0.2598 0.005 2bek:A, 2bek:B, 2bek:C, 2bek:D
26 6iub:A 264 42 0.0598 0.0682 0.4286 0.008 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
27 8egk:B 355 58 0.0631 0.0535 0.3276 0.021
28 6bs3:B 355 176 0.1296 0.1099 0.2216 0.034 6bs4:B
29 2ynm:B 268 41 0.0598 0.0672 0.4390 0.034 2ynm:A
30 3q9l:A 257 34 0.0565 0.0661 0.5000 0.081 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
31 5tvk:B 242 56 0.0698 0.0868 0.3750 0.089 3k9g:A, 5tvk:A
32 5k5z:D 314 143 0.1262 0.1210 0.2657 0.13 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
33 3fwy:A 268 43 0.0598 0.0672 0.4186 0.17 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
34 5u1g:D 211 98 0.1096 0.1564 0.3367 0.28 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
35 6riq:C 254 25 0.0432 0.0512 0.5200 0.48 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
36 6a20:A 395 212 0.1595 0.1215 0.2264 0.87 6a1z:A, 7d8v:A, 3gbj:B, 5zbr:B, 5zbr:A, 5zbr:C, 5zbs:B, 5zbs:A
37 4v02:A 244 36 0.0532 0.0656 0.4444 0.93 4v02:B, 4v03:A, 4v03:B
38 1g3q:A 237 78 0.0731 0.0928 0.2821 1.7 1g3r:A
39 2afh:E 289 34 0.0399 0.0415 0.3529 1.9 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
40 8r9r:A 255 63 0.0664 0.0784 0.3175 2.0
41 6nzj:A 273 40 0.0498 0.0549 0.3750 2.1 6nzj:B
42 8bx8:C 3947 78 0.0598 0.0046 0.2308 3.3 7k58:C, 7k5b:C, 7kek:C
43 3ixe:B 70 26 0.0332 0.1429 0.3846 3.8
44 3cwq:A 206 33 0.0498 0.0728 0.4545 3.8 3cwq:B
45 1ion:A 243 47 0.0565 0.0700 0.3617 5.5
46 3qo6:B 328 66 0.0664 0.0610 0.3030 6.0 3qo6:A, 3qo6:C
47 5b1s:A 294 34 0.0399 0.0408 0.3529 6.4 5b1s:B, 5b1s:C, 5b1s:D, 3bwc:A, 3bwc:B, 5y4p:A, 5y4p:B, 5y4p:C, 5y4p:D, 5y4q:A, 5y4q:B, 5y4q:C, 5y4q:D, 4yuv:A, 4yuv:B, 4yuw:A, 4yuw:B, 4yux:A, 4yux:B, 4yuy:A, 4yuy:B, 4yuz:A, 4yuz:B, 4yuz:C, 4yuz:D, 4yv0:A, 4yv0:B, 4yv0:C, 4yv0:D, 4yv1:A, 4yv1:B, 4yv1:C, 4yv1:D, 4yv2:A, 4yv2:B
48 1k9y:A 354 31 0.0432 0.0367 0.4194 6.4 1k9z:A, 1ka0:A, 1ka1:A, 1qgx:A
49 6hgg:A 339 50 0.0465 0.0413 0.2800 6.8 6ftp:A, 6hgf:A, 6hgi:A, 6hgk:A, 6hgl:A, 6hgm:A, 5om2:A, 5om3:A, 5om7:A
50 6hk9:B 78 53 0.0465 0.1795 0.2642 7.5 6hk9:A
51 3kjg:A 254 45 0.0565 0.0669 0.3778 8.4 3kjg:B, 3kjh:A, 3kji:A, 3kji:B
52 2k2r:A 129 58 0.0631 0.1473 0.3276 8.5 2vzd:A, 2vzd:B, 2vzg:B, 2vzi:B
53 5e7p:A 719 28 0.0399 0.0167 0.4286 8.6 5e7p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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