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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMNNLS
CMEIDPSAALKDMNDMAVSRGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRFDTVIFDTAPTGHTLRFLQLPNTLSK
LLEKFGISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQCKRC
QARWKMQKKYLDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELED

The query sequence (length=304) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3sja:A 338 336 1.0000 0.8994 0.9048 0.0 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E
2 4xtr:B 311 317 0.9704 0.9486 0.9306 0.0 3b2e:A, 3b2e:D, 5bw8:B, 4pwx:A, 4pwx:B, 3vlc:A, 2woj:A, 2woj:B, 2woj:D, 4xtr:A, 4xvu:H, 4xvu:A, 4xvu:B, 4xvu:G, 4xwo:A, 4xwo:G, 4xwo:M, 4xwo:N, 4xwo:S, 4xwo:B, 4xwo:H, 4xwo:T, 3zs8:B, 3zs9:A, 3zs9:B
3 3a36:A 314 334 0.9309 0.9013 0.8473 0.0 3a37:A, 5bwk:N
4 3sjd:C 292 315 0.9178 0.9555 0.8857 0.0 3sjd:A, 3sjd:B, 2woj:C, 3zs8:A
5 3idq:A 272 309 0.8355 0.9338 0.8220 8.24e-166
6 2woo:A 303 308 0.5789 0.5809 0.5714 1.13e-109 2woo:B, 2woo:C, 2woo:D, 2woo:E, 2woo:F
7 3io3:A 230 303 0.5461 0.7217 0.5479 3.16e-103
8 3ibg:A 300 317 0.5592 0.5667 0.5363 4.92e-103 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
9 8odu:A 291 303 0.5329 0.5567 0.5347 3.04e-99
10 3iqx:A 261 296 0.5099 0.5939 0.5236 1.63e-91 3iqw:A, 3iqw:B, 3iqx:B
11 6so5:A 313 315 0.4934 0.4792 0.4762 6.22e-89 7ru9:A, 7ru9:B, 7rua:A, 7rua:B, 7ruc:A, 7ruc:B
12 7spz:A 328 316 0.4770 0.4421 0.4589 4.21e-81 7spy:A
13 7sq0:A 306 301 0.4770 0.4739 0.4817 4.81e-81 7sq0:B
14 8hac:B 327 338 0.4934 0.4587 0.4438 9.06e-76 8hac:A
15 3zq6:B 288 284 0.3651 0.3854 0.3908 4.66e-48 3zq6:C
16 3ug7:A 317 286 0.3059 0.2934 0.3252 6.44e-45 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D
17 3zq6:D 307 304 0.3553 0.3518 0.3553 8.47e-45 3zq6:A
18 1ii0:B 553 259 0.2697 0.1483 0.3166 1.97e-29 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
19 1ii0:B 553 291 0.2336 0.1284 0.2440 2.25e-06 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
20 5zme:A 638 288 0.2829 0.1348 0.2986 3.02e-27 5zmf:A
21 5zme:A 638 333 0.2961 0.1411 0.2703 1.31e-23 5zmf:A
22 6bs3:A 330 235 0.1776 0.1636 0.2298 2.49e-06 6bs4:A, 6bs5:A
23 8elf:B 384 200 0.1711 0.1354 0.2600 3.04e-06 8elf:A
24 8egk:B 355 52 0.0559 0.0479 0.3269 0.007
25 6iub:A 264 42 0.0592 0.0682 0.4286 0.009 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
26 5if9:A 251 134 0.1349 0.1633 0.3060 0.023 5if9:B, 5ihp:A, 5ihp:B
27 6bs3:B 355 171 0.1316 0.1127 0.2339 0.035 6bs4:B
28 2ynm:B 268 41 0.0592 0.0672 0.4390 0.038 2ynm:A
29 2bej:A 245 126 0.1053 0.1306 0.2540 0.045 2bek:A, 2bek:B, 2bek:C, 2bek:D
30 3q9l:A 257 34 0.0559 0.0661 0.5000 0.081 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
31 5tvk:B 242 56 0.0691 0.0868 0.3750 0.086 3k9g:A, 5tvk:A
32 2a2d:A 448 108 0.0921 0.0625 0.2593 0.19 2a2c:A
33 3fwy:A 268 43 0.0592 0.0672 0.4186 0.19 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
34 5k5z:D 314 41 0.0625 0.0605 0.4634 0.20 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
35 5u1g:D 211 53 0.0691 0.0995 0.3962 0.41 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
36 6riq:C 254 25 0.0428 0.0512 0.5200 0.52 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
37 4v02:A 244 34 0.0526 0.0656 0.4706 0.97 4v02:B, 4v03:A, 4v03:B
38 6a20:A 395 227 0.1711 0.1316 0.2291 1.2 6a1z:A, 7d8v:A, 3gbj:B, 5zbr:B, 5zbr:A, 5zbr:C, 5zbs:B, 5zbs:A
39 8r9r:A 255 63 0.0658 0.0784 0.3175 1.8
40 2afh:E 289 34 0.0395 0.0415 0.3529 1.9 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
41 1g3q:A 237 78 0.0724 0.0928 0.2821 2.0 1g3r:A
42 6nzj:A 273 40 0.0493 0.0549 0.3750 2.2 6nzj:B
43 3ixe:B 70 29 0.0329 0.1429 0.3448 3.3
44 3cwq:A 206 33 0.0493 0.0728 0.4545 3.8 3cwq:B
45 1ion:A 243 47 0.0559 0.0700 0.3617 6.3
46 8pol:B 479 159 0.1086 0.0689 0.2075 6.6 4lvn:A, 4lvo:A, 8pol:A
47 5b1s:A 294 34 0.0395 0.0408 0.3529 6.8 5b1s:B, 5b1s:C, 5b1s:D, 3bwc:A, 3bwc:B, 5y4p:A, 5y4p:B, 5y4p:C, 5y4p:D, 5y4q:A, 5y4q:B, 5y4q:C, 5y4q:D, 4yuv:A, 4yuv:B, 4yuw:A, 4yuw:B, 4yux:A, 4yux:B, 4yuy:A, 4yuy:B, 4yuz:A, 4yuz:B, 4yuz:C, 4yuz:D, 4yv0:A, 4yv0:B, 4yv0:C, 4yv0:D, 4yv1:A, 4yv1:B, 4yv1:C, 4yv1:D, 4yv2:A, 4yv2:B
48 5e7p:A 719 28 0.0395 0.0167 0.4286 8.3 5e7p:B
49 3kjg:A 254 45 0.0559 0.0669 0.3778 9.3 3kjg:B, 3kjh:A, 3kji:A, 3kji:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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