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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRESVELALKLLDEDEI
RGYKLHVEVAKFQLDYKKKLSMQQKQLDWRPER

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7evo:D 200 113 1.0000 0.5650 1.0000 3.49e-79 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A
2 6r5k:H 394 85 0.2655 0.0761 0.3529 8.49e-08 6r5k:D, 6r5k:F
3 6r5k:H 394 80 0.1681 0.0482 0.2375 1.1 6r5k:D, 6r5k:F
4 6snj:A 131 92 0.2124 0.1832 0.2609 7.07e-07 6gbm:B
5 7uj1:B 270 82 0.2566 0.1074 0.3537 7.40e-04 7pu5:B, 7pu5:D, 7pu5:H, 7pu5:J, 7pu5:L, 7sp0:B, 7uj1:A
6 5ifm:C 256 84 0.2389 0.1055 0.3214 0.003 5ifm:A
7 4qqb:A 169 76 0.2124 0.1420 0.3158 0.010 1b7f:A, 1b7f:B, 4qqb:B
8 4qqb:A 169 91 0.2212 0.1479 0.2747 4.2 1b7f:A, 1b7f:B, 4qqb:B
9 2cjk:A 167 68 0.1681 0.1138 0.2794 0.011 2km8:C
10 1fnx:H 174 72 0.2212 0.1437 0.3472 0.019 1fxl:A, 1g2e:A
11 1fnx:H 174 105 0.2478 0.1609 0.2667 3.6 1fxl:A, 1g2e:A
12 3smz:A 280 61 0.1681 0.0679 0.3115 0.026
13 7dvq:Y 140 81 0.1858 0.1500 0.2593 0.061 8i0p:Y, 8i0r:Y
14 2mki:A 203 42 0.1504 0.0837 0.4048 0.11
15 6gkv:A 351 59 0.2035 0.0655 0.3898 0.16 6gkv:B, 6gky:A, 6gky:B, 6gkz:A, 6gkz:B, 6gkz:C, 6gkz:D
16 8i0v:4 161 76 0.1504 0.1056 0.2237 0.24
17 4ed5:B 169 86 0.2124 0.1420 0.2791 0.32 4ed5:A
18 4ed5:B 169 30 0.0973 0.0651 0.3667 1.8 4ed5:A
19 6m75:A 167 29 0.0973 0.0659 0.3793 0.39
20 6m75:A 167 68 0.1504 0.1018 0.2500 1.6
21 5b1s:A 294 41 0.1416 0.0544 0.3902 0.77 5b1s:B, 5b1s:C, 5b1s:D, 3bwc:A, 3bwc:B, 5y4p:A, 5y4p:B, 5y4p:C, 5y4p:D, 5y4q:A, 5y4q:B, 5y4q:C, 5y4q:D, 4yuv:A, 4yuv:B, 4yuw:A, 4yuw:B, 4yux:A, 4yux:B, 4yuy:A, 4yuy:B, 4yuz:A, 4yuz:B, 4yuz:C, 4yuz:D, 4yv0:A, 4yv0:B, 4yv0:C, 4yv0:D, 4yv1:A, 4yv1:B, 4yv1:C, 4yv1:D, 4yv2:A, 4yv2:B
22 6hpj:B 84 25 0.0973 0.1310 0.4400 0.78
23 5ith:A 80 84 0.1681 0.2375 0.2262 1.1 5o3j:A
24 7dco:4 174 85 0.1858 0.1207 0.2471 1.8 6g90:R, 5gm6:e, 5nrl:R, 7oqb:R, 7oqe:R, 5zwm:4
25 2dji:A 590 27 0.1062 0.0203 0.4444 5.4 1v5e:A, 1v5f:A, 1v5g:A
26 8skv:A 224 36 0.1062 0.0536 0.3333 5.6 1ow0:A, 1ow0:B
27 5c8b:B 504 51 0.1239 0.0278 0.2745 5.9 2gdu:A, 2gdu:B, 2gdv:A, 2gdv:B, 5m9x:B, 5man:B
28 4ou6:A 76 27 0.0973 0.1447 0.4074 5.9 4ou6:B, 4ou6:C, 4ou6:D, 4ou6:E, 4ou7:A, 4ou7:B, 4ou7:C, 4ou7:D, 4ou7:E
29 2vod:B 188 47 0.1239 0.0745 0.2979 6.4 2vod:A, 2von:A, 2von:B, 2voo:A, 2voo:B, 2vop:A, 1yty:A, 1yty:B, 1zh5:A, 1zh5:B
30 6xlv:A 203 92 0.2035 0.1133 0.2500 9.0 5ev1:A, 5ev2:A, 5ev3:A, 5ev4:A, 2g4b:A, 2hzc:A, 7s3a:A, 7s3b:A, 7s3c:A, 4tu7:A, 4tu7:B, 4tu8:A, 4tu8:B, 4tu9:A, 4tu9:B, 3vaf:A, 3vaf:B, 3vag:A, 3vag:B, 3vah:B, 3vah:A, 3vai:A, 3vai:B, 3vaj:A, 3vaj:B, 3vak:A, 3vak:B, 3val:I, 3val:A, 3val:D, 3val:B, 3vam:A, 3vam:B, 5w0g:A, 6xlw:A, 6xlx:A, 2yh1:A
31 7s01:D 631 102 0.2301 0.0412 0.2549 9.6 7s00:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218