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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VDPRLYFENRSKFIQDQKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNITGRIMRVSKLRFFDLVGDGEKI
QVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETILLSACLHMLPMKYTEIRYRQRYLDLLINE
SSRHTFVTRTKIINFLRNFLNERGFFEVETPMMNLIANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKV
FRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVYHLFGTYKISYNKDGPENQPIEIDFTPPYPKVSIVEEIE
KVTNTILEQPFDSNETIEKMINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPGL
TERLEMFICGKEVLNAYTELNDPFKQKECFDSAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNSIKDVILFPTMRPA

The query sequence (length=477) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6agt:B 506 505 1.0000 0.9427 0.9446 0.0 6agt:A, 6agt:C, 6agt:D, 7bt5:A, 7bt5:B, 6hcu:A, 6hcu:B, 6hcv:A, 6hcv:B, 8k9s:A, 8k9s:B, 8k9u:A, 8k9u:B, 8k9v:A, 8k9v:B, 8k9w:A, 8k9w:B, 8k9x:A, 8k9x:B, 6ka6:A, 6ka6:B, 6ka6:C, 6ka6:D, 6kab:A, 6kab:B, 6kab:C, 6kab:D, 6kbf:A, 6kbf:B, 6kcn:A, 6kcn:B, 6kcn:C, 6kcn:D, 6kct:A, 6kct:B, 6kct:C, 6kct:D, 6l3y:B, 6l3y:A, 6l4q:B, 6l4q:A, 6m0t:A, 6m0t:B, 6m0t:C, 6m0t:D, 4pg3:A, 4pg3:B, 4pg3:C, 4pg3:D, 4ycv:A, 4ycv:B, 4ycv:C, 4ycv:D, 5zh2:B, 5zh3:A, 5zh3:B, 5zh4:A, 5zh4:B, 5zh5:A, 5zh5:B
2 5zh2:A 464 483 0.9560 0.9828 0.9441 0.0
3 6bni:A 502 499 0.5577 0.5299 0.5331 0.0 6bni:B, 6c86:A, 6c86:B, 5eln:A, 5eln:B, 5eln:C, 5eln:D, 5elo:A, 5elo:B, 5elo:C, 5elo:D, 6hcw:A, 6hcw:B, 7zog:A, 7zog:B, 7zog:C, 7zog:D
4 6chd:A 506 507 0.5618 0.5296 0.5286 0.0 3bju:A, 3bju:B, 3bju:C, 3bju:D, 6chd:B, 4dpg:A, 4dpg:B, 4dpg:C, 4dpg:D, 4dpg:E, 4dpg:F, 4dpg:G, 4dpg:H, 7ea9:A, 7ea9:B, 7ea9:C, 7ea9:D, 6ild:A, 6ild:B, 6ilh:A, 6ilh:B, 4ycu:A, 4ycu:B, 4ycw:A, 4ycw:B, 4ycw:E, 4ycw:F
5 5hgq:B 482 489 0.5409 0.5353 0.5276 6.74e-178 5hgq:A, 5hgq:D, 5hgq:C
6 7f6w:A 506 509 0.5157 0.4862 0.4833 1.99e-161
7 4up7:A 529 503 0.4675 0.4216 0.4433 4.55e-142 4up9:A, 4upa:A
8 3a74:A 484 482 0.4235 0.4174 0.4191 1.29e-114 3a74:B, 3a74:C, 3a74:D, 3e9h:A, 3e9h:B, 3e9h:C, 3e9h:D, 3e9i:A, 3e9i:B, 3e9i:C, 3e9i:D
9 1e1t:A 485 499 0.4256 0.4186 0.4068 1.62e-110 1e1o:A, 1e22:A, 1e24:A, 1lyl:A, 1lyl:B, 1lyl:C, 5yzx:A, 5yzx:B, 5yzx:C
10 1bbu:A 486 505 0.4235 0.4156 0.4000 3.89e-105
11 4ex5:A 486 498 0.3899 0.3827 0.3735 1.27e-94 4ex5:B
12 6wbd:B 485 502 0.3795 0.3732 0.3606 6.56e-92 6wbd:A
13 6aqg:C 490 500 0.3564 0.3469 0.3400 1.26e-90 6aqg:A, 6aqg:B, 6aqg:D, 5vl1:A, 5vl1:B, 5vl1:C, 5vl1:D
14 6nrz:A 517 515 0.3753 0.3462 0.3476 3.85e-88 6nrz:B, 6ns0:A, 6ns0:B, 6o3f:A, 6o3f:B
15 6aqh:B 490 505 0.3501 0.3408 0.3307 8.15e-79 6aqh:A, 6aqh:C, 6aqh:D
16 7qh8:A 471 496 0.3459 0.3503 0.3327 9.47e-74 7qhn:A, 7qi8:A
17 3a5z:C 324 336 0.1740 0.2562 0.2470 8.20e-24 3a5y:B, 3a5y:C, 3a5y:D, 3a5z:A, 3a5z:E, 3a5z:G, 3g1z:A, 3g1z:B
18 3a5y:A 297 336 0.1677 0.2694 0.2381 3.75e-22
19 1b8a:A 438 407 0.2180 0.2374 0.2555 3.58e-18 1b8a:B, 3nel:A, 3nem:A, 3nem:B
20 4wj3:M 589 138 0.0860 0.0696 0.2971 1.57e-11 4wj3:N, 4wj3:O, 4wj3:P, 4wj4:A
21 4wj3:M 589 92 0.0608 0.0492 0.3152 2.31e-07 4wj3:N, 4wj3:O, 4wj3:P, 4wj4:A
22 1asy:A 490 350 0.1614 0.1571 0.2200 1.83e-11 1asy:B, 1asz:A, 1asz:B
23 6sjc:B 581 156 0.0797 0.0654 0.2436 4.27e-10 7ap4:A, 7ap4:B, 1efw:A, 1efw:B, 1g51:A, 1g51:B, 6hhv:A, 6hhv:B, 6hhw:A, 6hhw:B, 6hhx:A, 6hhx:B, 6sjc:A
24 6sjc:B 581 109 0.0713 0.0585 0.3119 5.07e-07 7ap4:A, 7ap4:B, 1efw:A, 1efw:B, 1g51:A, 1g51:B, 6hhv:A, 6hhv:B, 6hhw:A, 6hhw:B, 6hhx:A, 6hhx:B, 6sjc:A
25 1c0a:A 585 143 0.0881 0.0718 0.2937 5.34e-10 1il2:A, 1il2:B
26 1c0a:A 585 53 0.0503 0.0410 0.4528 1.12e-06 1il2:A, 1il2:B
27 5w25:A 583 178 0.1006 0.0823 0.2697 9.16e-10 5w25:B
28 5w25:A 583 33 0.0335 0.0274 0.4848 0.001 5w25:B
29 3kfu:C 377 370 0.1635 0.2069 0.2108 1.29e-09 3kfu:A, 3kfu:D, 3kfu:B
30 4o2d:B 515 179 0.1006 0.0932 0.2682 5.62e-09
31 4o2d:B 515 36 0.0377 0.0350 0.5000 8.96e-05
32 4o2d:A 580 179 0.1006 0.0828 0.2682 5.66e-09 4rmf:A
33 4o2d:A 580 36 0.0377 0.0310 0.5000 1.08e-04 4rmf:A
34 2xgt:B 433 158 0.0964 0.1062 0.2911 9.54e-07 2xgt:A, 2xti:A, 2xti:B
35 3m4p:A 435 332 0.1405 0.1540 0.2018 8.40e-06 3m4p:B, 3m4p:C, 3m4p:D
36 1x54:A 434 351 0.1677 0.1843 0.2279 3.91e-04 1x55:A
37 8tc8:A 435 328 0.1384 0.1517 0.2012 0.003 8h53:A, 8h53:B, 8h53:C, 8h53:D, 8tc8:B, 8tc8:C, 8tc8:D, 8tc9:A, 8tc9:B, 8tc9:C, 8tc9:D
38 3p8v:A 294 329 0.1405 0.2279 0.2036 0.005 3p8v:B, 3p8y:A, 3p8y:B, 3reu:A, 3reu:B, 3rex:A, 3rex:B, 3rl6:A, 3rl6:B
39 7u0r:B 278 114 0.0671 0.1151 0.2807 0.80 8c49:A, 8c49:B, 8dqg:D, 8dqg:A, 8dqh:D, 8dqh:A, 8dqi:D, 8dqi:A, 8dqj:D, 7u0r:A
40 8ci0:AAA 666 195 0.0922 0.0661 0.2256 1.1 8ci0:BBB, 8ci0:CCC, 1itz:A, 1itz:B, 1itz:C
41 7by6:A 299 26 0.0273 0.0435 0.5000 1.9
42 2eq6:A 460 89 0.0503 0.0522 0.2697 2.4 2eq6:B, 2eq8:A, 2eq8:B, 2eq8:D, 2eq8:E, 2eq9:A, 2eq9:B, 2eq9:D, 2eq9:E, 2eq9:G, 2eq9:H, 2eq9:J, 2eq9:K
43 7dpi:C 292 26 0.0273 0.0445 0.5000 2.4 7dpi:A
44 2du3:A 534 67 0.0377 0.0337 0.2687 2.5 2du5:A, 2du6:A
45 2du4:A 466 67 0.0377 0.0386 0.2687 2.7 2du3:B, 2du5:B, 2du6:B
46 3l4g:C 508 55 0.0377 0.0354 0.3273 3.7 3l4g:A, 3l4g:E, 3l4g:G, 3l4g:I, 3l4g:K, 3l4g:M, 3l4g:O
47 6z1p:BS 433 130 0.0671 0.0739 0.2462 3.7
48 5mgu:A 407 44 0.0314 0.0369 0.3409 4.1 3cmq:A, 3hfv:A, 5mgh:A, 5mgw:A, 8p8x:A, 3teg:A, 3tup:A
49 6ha8:V 541 42 0.0273 0.0240 0.3095 6.4
50 7eqg:D 309 55 0.0314 0.0485 0.2727 7.6 6b44:C, 6b45:C, 6b46:C, 6b47:C, 6b48:C, 7ecv:C, 7ecw:C, 7elm:C, 7elm:M, 7eln:C, 7eln:M, 7jzw:D, 7jzx:D, 7jzy:D, 7jzz:D, 6ne0:C, 7t3j:D, 7t3k:D, 7t3k:d, 7t3l:D, 7t3l:d, 7taw:D, 7taw:d, 7tax:D, 5uz9:C, 6vqw:D, 6vqx:D, 6w1x:C, 7we6:C, 7we6:M, 6whi:C, 5xlo:A, 5xlp:C, 7yhs:C
51 1x64:A 89 51 0.0294 0.1573 0.2745 7.8
52 5hb3:C 709 27 0.0294 0.0197 0.5185 8.0 5hb3:A, 7tbi:D1, 7tbi:D2, 7tbi:D3, 7tbi:D4
53 2xz7:A 324 166 0.0922 0.1358 0.2651 8.5 2xz9:A, 2xz9:B
54 7elm:E 337 55 0.0314 0.0445 0.2727 8.6 6b44:D, 6b44:E, 6b44:F, 6b44:G, 6b44:H, 6b45:D, 6b45:E, 6b45:F, 6b45:G, 6b45:H, 6b46:D, 6b46:E, 6b46:F, 6b46:G, 6b46:H, 6b47:D, 6b47:E, 6b47:F, 6b47:G, 6b47:H, 6b48:D, 6b48:E, 6b48:F, 6b48:G, 6b48:H, 7ecv:D, 7ecv:E, 7ecv:F, 7ecv:G, 7ecv:H, 7ecw:D, 7ecw:E, 7ecw:F, 7ecw:G, 7ecw:H, 7elm:D, 7elm:F, 7elm:G, 7elm:H, 7elm:N, 7elm:O, 7elm:P, 7elm:Q, 7elm:R, 7eln:D, 7eln:E, 7eln:F, 7eln:G, 7eln:H, 7eln:N, 7eln:O, 7eln:P, 7eln:Q, 7eln:R, 7eqg:E, 7eqg:F, 7eqg:G, 7eqg:H, 7eqg:I, 7jzw:E, 7jzw:F, 7jzw:G, 7jzw:H, 7jzw:I, 7jzx:E, 7jzx:F, 7jzx:G, 7jzx:H, 7jzx:I, 7jzy:E, 7jzy:F, 7jzy:G, 7jzy:H, 7jzy:I, 7jzz:E, 7jzz:F, 7jzz:G, 7jzz:H, 7jzz:I, 6ne0:D, 6ne0:E, 6ne0:F, 6ne0:G, 6ne0:H, 7t3j:E, 7t3j:F, 7t3j:G, 7t3j:H, 7t3j:I, 7t3k:E, 7t3k:F, 7t3k:G, 7t3k:H, 7t3k:I, 7t3k:e, 7t3k:f, 7t3k:g, 7t3k:h, 7t3k:i, 7t3l:E, 7t3l:F, 7t3l:G, 7t3l:H, 7t3l:I, 7t3l:e, 7t3l:f, 7t3l:g, 7t3l:h, 7t3l:i, 7taw:E, 7taw:F, 7taw:G, 7taw:H, 7taw:I, 7taw:e, 7taw:f, 7taw:g, 7taw:h, 7taw:i, 7tax:E, 7tax:F, 7tax:G, 7tax:H, 7tax:I, 5uz9:D, 5uz9:E, 5uz9:F, 5uz9:G, 5uz9:H, 6vqv:F, 6vqv:G, 6vqv:H, 6vqv:I, 6vqv:J, 6vqw:E, 6vqw:F, 6vqw:G, 6vqw:H, 6vqw:I, 6vqx:E, 6vqx:F, 6vqx:G, 6vqx:H, 6vqx:I, 6w1x:D, 6w1x:E, 6w1x:F, 6w1x:G, 6w1x:H, 7we6:D, 7we6:E, 7we6:F, 7we6:G, 7we6:H, 7we6:N, 7we6:O, 7we6:P, 7we6:Q, 7we6:R, 6whi:D, 6whi:E, 6whi:F, 6whi:G, 6whi:H, 5xlo:B, 5xlo:C, 5xlo:D, 5xlo:E, 5xlo:F, 5xlp:D, 5xlp:E, 5xlp:F, 7yhs:D, 7yhs:F, 7yhs:G, 7yhs:H, 7yhs:I
55 7nhk:0 495 129 0.0671 0.0646 0.2481 8.9
56 2be9:B 148 68 0.0356 0.1149 0.2500 9.0 1pg5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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