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BioLiP
>protein
VDPAKEAIMKPQLTMLKGLSDAELKALADFILRIAKQAQEKQQQDVAKAIFQQKGCGSCHQANVDTVGPSLAKIAQAYAG
KEDQLIKFLKGEAPAI

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5z25:A 96 96 1.0000 1.0000 1.0000 8.17e-65
2 3x15:A 87 50 0.5000 0.5517 0.9600 1.18e-29 3x15:G, 3x15:D, 3x15:J, 2zxy:A
3 3x15:A 87 32 0.3333 0.3678 1.0000 2.13e-15 3x15:G, 3x15:D, 3x15:J, 2zxy:A
4 5xec:A 82 43 0.1771 0.2073 0.3953 1.86e-06 5xed:A
5 4xxl:A 92 45 0.1667 0.1739 0.3556 1.48e-04
6 1cor:A 82 36 0.1354 0.1585 0.3611 5.29e-04 6kq1:A, 6kq1:B
7 1cch:A 82 35 0.1458 0.1707 0.4000 7.67e-04 1fi3:A, 2i8f:A
8 1a56:A 81 32 0.1458 0.1728 0.4375 0.003 1a8c:A, 4jcg:A, 3zow:A, 3zow:B, 3zow:C, 3zow:D, 3zow:E, 3zow:F, 3zow:G, 3zow:H, 3zow:I, 3zow:J, 3zow:K, 3zow:L, 3zow:M, 3zow:N, 3zow:O, 3zow:P, 3zow:Q, 3zow:R, 3zox:A, 3zox:B, 3zox:C, 3zox:D, 3zoy:A, 3zoy:B, 3zoy:C, 3zoy:D
9 1a56:A 81 26 0.1250 0.1481 0.4615 6.9 1a8c:A, 4jcg:A, 3zow:A, 3zow:B, 3zow:C, 3zow:D, 3zow:E, 3zow:F, 3zow:G, 3zow:H, 3zow:I, 3zow:J, 3zow:K, 3zow:L, 3zow:M, 3zow:N, 3zow:O, 3zow:P, 3zow:Q, 3zow:R, 3zox:A, 3zox:B, 3zox:C, 3zox:D, 3zoy:A, 3zoy:B, 3zoy:C, 3zoy:D
10 5aur:A 83 46 0.1771 0.2048 0.3696 0.003 2ai5:A, 5aur:C, 5aur:E, 5aur:G, 5aus:A, 5aus:C, 1ayg:A, 3vym:A, 1ynr:A, 1ynr:B, 1ynr:C, 1ynr:D, 4zid:A
11 351c:A 82 32 0.1250 0.1463 0.3750 0.004 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
12 1fj0:A 114 39 0.1562 0.1316 0.3846 0.024 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
13 5xec:C 80 32 0.1250 0.1500 0.3750 0.049 5xed:C
14 2d0s:A 79 30 0.1250 0.1519 0.4000 0.075
15 5gzl:A 357 35 0.1458 0.0392 0.4000 1.6 5gzi:B, 5gzi:A, 5gzj:A, 5gzj:B, 5gzl:B, 5gzm:A, 5gzm:B, 5yu0:A, 5yu0:B, 5yu0:C, 5yu0:D, 5yu1:A, 5yu1:B, 5yu1:C, 5yu1:D, 5yu3:A, 5yu3:B, 5yu3:C, 5yu3:D, 5yu4:A, 5yu4:B, 5yu4:C, 5yu4:D
16 8rbx:b 1051 45 0.1771 0.0162 0.3778 1.7 7pks:b, 8rbz:b
17 1bvb:A 211 47 0.1771 0.0806 0.3617 1.9 1ft5:A, 1ft6:A
18 1fcd:C 174 23 0.0938 0.0517 0.3913 3.1 1fcd:D
19 7oqr:A 274 78 0.1979 0.0693 0.2436 3.6 7opt:A, 7opt:B, 7oqr:B
20 1qn2:A 99 25 0.1042 0.1010 0.4000 4.0 1qn2:B, 1qn2:C
21 3esb:A 199 35 0.1250 0.0603 0.3429 4.1 3ef3:A, 3esa:A, 3esa:B, 3esc:A, 3esd:A, 1oxm:A, 1oxm:B, 1xzc:A, 1xzk:A, 1xzk:B, 1xzl:A, 1xzm:A
22 1duw:A 289 23 0.0938 0.0311 0.3913 4.7
23 1c53:A 79 30 0.1146 0.1392 0.3667 5.4
24 19hc:A 292 23 0.0938 0.0308 0.3913 5.9 19hc:B, 1ofw:A, 1ofw:B, 1ofy:A, 1ofy:B
25 6m0w:A 1032 63 0.2083 0.0194 0.3175 6.1 6m0v:A, 6m0x:A
26 6vji:A 255 59 0.1458 0.0549 0.2373 7.2 8th9:A, 6vji:B
27 4xyd:B 145 15 0.0938 0.0621 0.6000 7.8
28 1dvh:A 79 19 0.1042 0.1266 0.5263 7.9 2dvh:A, 1dwl:B, 1e08:E
29 3a0b:V 137 32 0.1354 0.0949 0.4062 9.3 3a0b:v, 3a0h:V, 3a0h:v, 2axt:V, 2axt:v, 5b5e:V, 5b5e:v, 5b66:V, 5b66:v, 7cji:V, 7cji:v, 7cjj:V, 7cjj:v, 7cou:V, 7cou:v, 7d1t:V, 7d1t:v, 7d1u:V, 7d1u:v, 6dhe:V, 6dhe:v, 6dhf:V, 6dhf:v, 6dhg:V, 6dhg:v, 6dhh:V, 6dhh:v, 6dho:V, 6dho:v, 6dhp:V, 6dhp:v, 5e79:V, 5e79:v, 5e7c:V, 5e7c:v, 7eda:V, 9evx:V, 9evx:v, 8ez5:V, 8ez5:v, 8f4c:V, 8f4c:v, 8f4d:V, 8f4d:v, 8f4e:V, 8f4e:v, 8f4f:V, 8f4f:v, 8f4g:V, 8f4g:v, 8f4h:V, 8f4h:v, 8f4i:V, 8f4i:v, 8f4j:V, 8f4j:v, 8f4k:V, 8f4k:v, 4fby:V, 4fby:i, 8gn0:V, 8gn0:v, 8gn1:V, 8gn1:v, 8gn2:V, 8gn2:v, 5gth:V, 5gth:v, 5gti:V, 5gti:v, 5h2f:V, 5h2f:v, 4il6:V, 4il6:v, 8ir5:V, 8ir5:v, 8ir6:V, 8ir6:v, 8ir7:V, 8ir7:v, 8ir8:V, 8ir8:v, 8ir9:V, 8ir9:v, 8ira:V, 8ira:v, 8irb:V, 8irb:v, 8irc:V, 8irc:v, 8ird:V, 8ird:v, 8ire:V, 8ire:v, 8irf:V, 8irf:v, 8irg:V, 8irg:v, 8irh:V, 8irh:v, 8iri:V, 8iri:v, 4ixq:V, 4ixq:v, 4ixr:V, 4ixr:v, 1izl:V, 1izl:0, 6jlj:V, 6jlj:v, 6jlk:V, 6jlk:v, 6jll:V, 6jll:v, 6jlm:V, 6jlm:v, 6jln:V, 6jln:v, 6jlo:V, 6jlo:v, 6jlp:V, 6jlp:v, 5kaf:V, 5kaf:v, 5kai:V, 5kai:v, 3kzi:V, 5mx2:V, 5mx2:v, 1mz4:A, 4pbu:V, 4pbu:v, 4pj0:V, 4pj0:v, 7rf1:V, 7rf1:v, 7rf2:V, 7rf2:v, 7rf3:V, 7rf3:v, 7rf4:V, 7rf4:v, 7rf5:V, 7rf5:v, 7rf6:V, 7rf6:v, 7rf7:V, 7rf7:v, 7rf8:V, 7rf8:v, 4rvy:V, 4rvy:v, 1s5l:V, 1s5l:v, 5tis:V, 5tis:v, 4tnh:V, 4tnh:v, 4tni:V, 4tni:v, 4tnj:V, 4tnj:v, 4tnk:V, 4tnk:v, 4ub6:V, 4ub6:v, 4ub8:V, 4ub8:v, 5v2c:V, 5v2c:v, 4v62:AV, 4v62:BV, 4v82:AV, 4v82:BV, 6w1o:V, 6w1o:v, 6w1p:V, 6w1p:v, 6w1q:V, 6w1q:v, 6w1r:V, 6w1r:v, 6w1t:V, 6w1t:v, 6w1u:V, 6w1u:v, 6w1v:V, 6w1v:v, 1w5c:T, 1w5c:V, 5ws5:V, 5ws5:v, 5ws6:V, 5ws6:v, 3wu2:V, 3wu2:v, 7yq2:V, 7yq2:v, 7yq7:V, 7yq7:v, 5zzn:V, 5zzn:v
30 1lf9:A 674 27 0.1250 0.0178 0.4444 9.7 1lf9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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