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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSK
MAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIV
ITGAKMRDETYKAFENIYPVLSEFRK

The query sequence (length=186) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6uep:B 191 186 1.0000 0.9738 1.0000 4.91e-137 6njq:B, 6njq:A, 1qn3:A, 1qn3:B, 1qn4:A, 1qn4:B, 1qn5:A, 1qn5:B, 1qn6:A, 1qn6:B, 1qn7:A, 1qn7:B, 1qn8:A, 1qn8:B, 1qn9:A, 1qn9:B, 1qna:A, 1qna:B, 1qnb:A, 1qnb:B, 1qnc:A, 1qnc:B, 1qne:A, 1qne:B, 6ueo:A, 6ueo:D, 6ueo:G, 6ueo:J, 6uep:A, 6ueq:B, 6uer:A, 6uer:B, 1vol:B, 1vtl:E, 1vtl:F, 1vto:A, 1vto:B
2 4b0a:A 237 179 0.8172 0.6414 0.8492 1.44e-110
3 5iy6:P 185 183 0.8011 0.8054 0.8142 3.44e-110 8bvw:O, 8byq:O, 8bz1:O, 1c9b:B, 1c9b:F, 1c9b:J, 1c9b:N, 1c9b:R, 1cdw:A, 7edx:P, 7eg7:P, 7eg8:P, 7eg9:P, 7ega:P, 7egb:P, 7egc:P, 7egd:P, 7egj:P, 7ena:DP, 7enc:DP, 5fur:A, 8gxq:DP, 8gxs:DP, 8ity:U, 8iue:U, 8iuh:U, 5iy7:P, 5iy8:P, 5iy9:P, 5iya:P, 5iyb:P, 5iyc:P, 5iyd:P, 1jfi:C, 7lbm:P, 6mzm:T, 5n9g:B, 5n9g:G, 1nvp:A, 7nvr:O, 7nvs:O, 7nvt:O, 7nvu:O, 7nvy:O, 7nvz:O, 7nw0:O, 6o9l:P, 4roc:B, 4rod:B, 4roe:B, 8s51:O, 8s52:O, 8s5n:O, 1tgh:A, 8wak:P, 8wal:P, 8wan:P, 8wao:P, 8wap:P, 8waq:P, 8war:P, 8was:P, 7zwc:O, 7zwd:O, 7zx7:O, 7zx8:O, 7zxe:O
4 6cnb:R 522 182 0.8280 0.2950 0.8462 1.51e-108 8cen:O, 8ceo:O, 6cnc:R, 6cnd:R, 6cnf:R, 6eu0:Y, 6f40:U, 6f41:U, 6f42:U, 6f44:U, 8ffz:H, 5fmf:Q, 5fyw:O, 5fz5:O, 6gyk:O, 6gyl:O, 6gym:O, 7ml0:O, 7ml1:O, 7ml2:O, 7ml4:O, 1ngm:A, 1ngm:E, 1ngm:I, 1ngm:M, 1nh2:A, 7o4i:O, 7o4j:O, 7o72:O, 7o73:O, 7o75:O, 7oh9:K, 7oha:K, 7ohb:K, 5oqj:O, 5oqm:O, 7q5b:Y, 1rm1:A, 5sva:j, 4v1n:O, 4v1o:O, 1ytb:A, 1ytb:B, 1ytf:A, 7z7n:D, 7zb5:D, 7zb5:G, 7zs9:O, 7zsa:O, 7zsb:O
5 4wzs:D 178 178 0.7581 0.7921 0.7921 8.91e-104
6 1ais:A 181 187 0.3871 0.3978 0.3850 2.39e-33 1d3u:A
7 6l2c:A 402 31 0.0753 0.0348 0.4516 2.7 6l2c:B, 6l2c:C, 6l2c:D
8 4r21:B 423 33 0.0645 0.0284 0.3636 4.8 4r20:A, 4r20:B, 4r21:A
9 1pg0:A 492 79 0.1129 0.0427 0.2658 4.9 1pg2:A
10 4mlp:C 492 92 0.1237 0.0467 0.2500 5.0 7ej9:A, 7ej9:B, 4i6g:A, 4i6g:B, 6kx8:A, 6kx8:B, 4mlp:A, 4mlp:B, 4mlp:D, 4u8h:A, 4u8h:C, 7v8y:A, 7v8z:A
11 1pfu:A 547 79 0.1129 0.0384 0.2658 5.5 8bru:A, 8brv:A, 8brw:A, 8brx:A, 1f4l:A, 3h97:A, 3h99:A, 3h9b:A, 3h9c:A, 1p7p:A, 1pfv:A, 1pfw:A, 1pfy:A, 1qqt:A, 6spn:A, 6spo:A, 6spp:A, 6spq:A, 6spr:A
12 5bxi:B 153 35 0.0645 0.0784 0.3429 7.4 5bxi:A, 5bxi:C, 5bxi:I
13 3zdr:A 403 55 0.0753 0.0347 0.2545 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218