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BioLiP
>protein
VDLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQF

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4rt4:D 52 49 0.9800 0.9423 1.0000 7.97e-30 4riq:A, 4riq:B, 4riq:D, 4riq:E, 4riq:G, 4riq:H, 4riq:J, 4riq:K, 4riq:Z, 4riq:N, 4riq:P, 4riq:Q, 4riq:S, 4riq:T, 4riq:V, 4rt4:A, 4rt4:B
2 6ven:P 42 38 0.3000 0.3571 0.3947 3.43e-05
3 6z0p:A 242 40 0.3200 0.0661 0.4000 1.5 6z0p:B
4 3csq:D 326 35 0.2000 0.0307 0.2857 2.8 3csq:A, 3csq:B, 3csq:C
5 3nwn:A 308 44 0.2800 0.0455 0.3182 3.2
6 5h7y:A 278 18 0.2000 0.0360 0.5556 3.7
7 7jrj:I 327 26 0.2000 0.0306 0.3846 4.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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