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BioLiP
>protein
VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1h88:B 71 70 1.0000 0.9859 1.0000 4.90e-45 2e42:A, 2e42:B, 2e43:A, 2e43:B, 1gtw:A, 1gtw:B, 1gu4:A, 1gu4:B, 1gu5:A, 1gu5:B, 1h88:A, 1h89:A, 1h89:B, 1h8a:A, 1h8a:B, 1hjb:A, 1hjb:B, 1hjb:D, 1hjb:E, 1io4:A, 1io4:B, 8k8d:A, 8k8d:B, 7l4v:A, 7l4v:B, 6mg1:A, 6mg1:B, 6mg2:A, 6mg2:B, 6mg3:A, 6mg3:B, 7upz:A, 7upz:B
2 8k8c:A 60 60 0.6571 0.7667 0.7667 2.04e-27 8k8c:B, 1nwq:A, 1nwq:C
3 8k86:A 63 51 0.2714 0.3016 0.3725 0.18 8k86:B, 8k8a:A, 8k8a:B
4 6sdw:A 177 68 0.2857 0.1130 0.2941 1.0 6htu:A, 6htu:B, 6htu:C, 6sdy:A
5 7qep:S1 209 62 0.2714 0.0909 0.3065 1.5
6 1t2k:D 61 53 0.2571 0.2951 0.3396 1.9
7 6hn5:F 323 22 0.1571 0.0341 0.5000 2.4
8 1ysa:C 57 49 0.2429 0.2982 0.3469 2.5 1dgc:A, 2dgc:A, 1ysa:D
9 7yq5:E 799 22 0.1571 0.0138 0.5000 2.9 7pg0:A, 7pg2:A, 7pg3:A, 7pg4:A, 7sl4:B, 7yq6:E, 7yq6:F
10 2c9l:Y 63 51 0.2429 0.2698 0.3333 2.9 2c9l:Z, 2c9n:Y, 2c9n:Z, 7nx5:A, 7nx5:B, 7nx5:E, 7nx5:F, 5szx:A, 5szx:B
11 8guy:F 835 22 0.1571 0.0132 0.5000 3.1 6ce7:P, 6ce9:M, 6ce9:P, 6ceb:M, 6ceb:P, 8guy:E, 6hn5:E, 5j3h:E, 7kd6:E, 7kd6:K, 7kd6:Q, 7kd6:W, 5kqv:E, 5kqv:F, 7mqo:F, 7mqo:E, 7mqr:E, 7mqr:F, 4oga:E, 7pg0:B, 7pg2:B, 7pg3:B, 7pg4:B, 7qid:C, 7sl3:A, 7sl3:B, 6sof:A, 6sof:C, 7u6e:F, 7u6e:E, 6vep:E, 6vep:K, 6vep:Q, 6vep:W, 6veq:K, 6veq:E, 3w11:E, 3w12:E, 3w13:E, 4xss:E, 4xst:E, 7yq3:F, 7yq3:E, 7yq4:E, 7yq4:F, 7yq5:F
12 6rm8:A 655 31 0.1571 0.0168 0.3548 3.9 6fa5:A, 6faa:A, 6fac:A, 6rm9:A, 6rma:A, 6rmb:A, 6rmc:A, 6rmc:B, 6zm2:A
13 4zc0:B 434 43 0.2000 0.0323 0.3256 6.3 3gxv:A
14 4v2i:A 315 34 0.1857 0.0413 0.3824 7.6 4v2i:B
15 7sl6:A 819 22 0.1429 0.0122 0.4545 8.8 7mqs:F, 7mqs:E, 7sl1:A, 7sl1:B, 7sl2:A, 7sl2:B, 7sl6:B, 7sl7:A, 7sl7:B
16 8hev:H 417 44 0.2143 0.0360 0.3409 9.3 8hev:A, 8hev:B, 8hev:C, 8hev:U, 8hev:G, 8hev:J, 8hev:L, 8hev:V, 8hev:I, 8hev:K, 8hev:M
17 7md4:B 778 22 0.1429 0.0129 0.4545 9.3
18 7sl4:A 786 22 0.1429 0.0127 0.4545 9.5 8dtm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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