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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VDICTAKPRDIPMNPMCIYRSPEEATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDT
LQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKEN
AEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEGKF
RYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDM
GLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEEGSASTAVVIAGRSLNPNRVTFKANRPFLVFIREVPLNTII
FMGRVANPCV

The query sequence (length=410) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1e03:L 423 423 1.0000 0.9693 0.9693 0.0 1azx:I, 1azx:L, 2b5t:I, 1br8:I, 1e03:I, 3evj:I, 3evj:L, 2gd4:I, 2gd4:C, 1jvq:I, 3kcg:I, 1lk6:I, 1nq9:I, 1nq9:L, 1r1l:I, 1sr5:A, 1tb6:I
2 4zk0:A 367 379 0.3537 0.3951 0.3826 1.62e-74
3 7qrn:A 364 387 0.3268 0.3681 0.3463 3.60e-65
4 2arq:A 360 384 0.3171 0.3611 0.3385 1.23e-63 2arr:A, 1jrr:A
5 8h4x:A 330 333 0.3049 0.3788 0.3754 2.61e-61
6 8gxv:A 353 376 0.3000 0.3484 0.3271 3.17e-61
7 1ova:A 385 366 0.2902 0.3091 0.3251 5.74e-58
8 4dy7:F 378 363 0.2805 0.3042 0.3168 4.43e-52
9 4aqh:B 383 379 0.2610 0.2794 0.2823 4.74e-52 1a7c:A, 4aqh:A, 4aqh:C, 7aqf:A, 7aqg:A, 1dvm:A, 1dvm:C, 1dvm:D, 4g8o:D, 4g8r:A, 4g8r:B, 4ic0:A, 4ic0:C, 3q02:A, 3q02:B, 3q03:A, 3q03:B, 3r4l:A, 3ut3:B
10 1jmj:A 397 386 0.3073 0.3174 0.3264 6.39e-52
11 4c49:A 367 379 0.2902 0.3243 0.3140 8.41e-51 4bb2:A, 4bb2:B, 4c49:B, 4c49:C, 4c49:D, 2vdy:A, 2vdy:B
12 5hgc:A 373 375 0.2927 0.3217 0.3200 4.23e-50
13 7b2t:A 342 332 0.2512 0.3012 0.3102 1.14e-43 7b2t:B
14 1hp7:A 376 375 0.2707 0.2952 0.2960 1.21e-42 7ael:AAA, 7api:A, 8api:A, 9api:A, 6i4v:A, 1iz2:A, 7npl:A, 8pi2:A, 4pyw:A
15 6hgg:A 339 346 0.2854 0.3451 0.3382 5.66e-42 6ftp:A, 6hgf:A, 6hgi:A, 6hgk:A, 6hgl:A, 6hgm:A, 5om2:A, 5om3:A, 5om7:A
16 7rbw:A 381 372 0.2585 0.2782 0.2849 5.92e-40 7rbw:B
17 1lq8:G 330 340 0.2390 0.2970 0.2882 5.00e-38 3dy0:A, 1lq8:A, 1lq8:C, 1lq8:E
18 7npk:A 352 373 0.2634 0.3068 0.2895 5.14e-37
19 6f4v:A 341 333 0.2659 0.3196 0.3273 6.12e-37
20 3zha:A 380 389 0.2244 0.2421 0.2365 6.26e-36 4au2:A, 4au2:B, 4au2:D, 4au3:A, 4au3:B, 4au3:C, 4au3:D, 7bdu:A, 7bdu:B, 7bee:A, 7bee:B, 7bfi:A, 7bfi:C, 7bfi:D, 7bfi:B, 3zha:B, 3zha:C, 3zha:D, 3zha:K, 3zha:L, 3zha:P, 3zha:Q
21 4x30:A 372 382 0.2585 0.2849 0.2775 2.31e-34 2ceo:A, 2ceo:B, 2riw:A, 2riw:B, 2xn3:A, 2xn3:B, 2xn5:A, 2xn6:A, 2xn6:B, 2xn7:A, 2xn7:B, 4yia:A, 4yia:B
22 5ncw:A 334 316 0.2244 0.2754 0.2911 4.84e-33 5nct:A
23 2v95:A 342 378 0.2415 0.2895 0.2619 4.74e-31
24 6los:A 369 384 0.2537 0.2818 0.2708 2.57e-29
25 4au2:C 338 392 0.2122 0.2574 0.2219 5.38e-26
26 8h4x:B 32 28 0.0341 0.4375 0.5000 0.009
27 3w6x:A 225 73 0.0585 0.1067 0.3288 0.40 3w6x:B, 3w6x:C, 3w6x:F
28 8qqk:B 263 73 0.0537 0.0837 0.3014 0.40 1cyx:A, 1fft:B, 8go3:B, 7n9z:G, 6wti:B, 7xmc:B, 7xmd:B
29 1as4:B 33 25 0.0293 0.3636 0.4800 0.72
30 6hgi:B 35 31 0.0317 0.3714 0.4194 0.79 6ftp:B, 6hgf:B, 6hgg:B, 6hgj:B, 6hgk:B, 6hgl:B, 5om2:B, 5om3:B, 5om7:B
31 7ohd:B 134 48 0.0415 0.1269 0.3542 1.1
32 6pd2:C 616 65 0.0537 0.0357 0.3385 1.5 6pd1:A, 6pd1:B, 6pd1:D, 6pd2:A, 6pd2:B, 6pd2:D
33 2ovq:B 444 58 0.0488 0.0450 0.3448 1.8 2ovr:B, 7t1y:B, 7t1z:B, 5v4b:B
34 6p8v:G 320 75 0.0463 0.0594 0.2533 3.6 6p80:A, 6u7b:A, 6u7b:C
35 4grs:A 333 39 0.0366 0.0450 0.3846 3.9 4c1k:A, 4c1k:B, 4c1k:C, 4c1k:D, 4c1k:E, 4c1k:F, 4c1l:A, 4c1l:B, 4grs:C, 4grs:B, 4grs:D, 1zco:A, 1zco:B
36 4uzs:A 687 51 0.0488 0.0291 0.3922 4.0 4ucf:A, 4ucf:B, 4ucf:C, 4uzs:B
37 5m1k:B 189 29 0.0366 0.0794 0.5172 4.1 5m1n:A, 5m1n:B, 5m1o:A, 5m1o:B, 5m1p:A, 5m1q:A
38 3kt8:D 410 101 0.0683 0.0683 0.2772 7.4 3kt0:A, 3kt3:A, 3kt3:B, 3kt3:C, 3kt3:D, 3kt6:A, 3kt6:B, 3kt6:C, 3kt6:D, 3kt8:A, 3kt8:B, 3kt8:C
39 9fa6:A 501 93 0.0610 0.0499 0.2688 8.2 8awk:AAA, 8awr:AAA, 8ax3:A, 8ax3:B, 9f9z:A, 9fa3:A, 9fad:A, 9fal:A, 9fay:A, 9faz:A, 9fb2:A, 9fdi:A, 3gxf:B, 3gxf:D, 5lvx:C, 5lvx:B, 5lvx:A, 5lvx:D, 6moz:A, 2nsx:A, 2nsx:B, 2nsx:C, 2nsx:D, 2nt0:A, 2nt0:B, 2nt0:C, 2nt0:D, 7nwv:AAA, 7nwv:BBB, 8p3e:B, 8p41:A, 8p41:B, 6q1n:A, 6q1n:B, 6q1p:A, 6q1p:B, 6q6k:A, 6q6k:B, 6q6l:A, 6q6l:B, 6q6n:A, 6q6n:B, 3rik:B, 3rik:D, 3ril:A, 3ril:B, 3ril:C, 3ril:D, 6t13:B, 6t13:C, 6t13:A, 6t13:D, 6tjq:BBB, 6tn1:AAA, 2v3d:A, 2v3d:B, 2v3e:A, 2v3e:B, 2vt0:A, 2vt0:B, 2wcg:A, 2wcg:B, 2xwd:A, 2xwd:B, 2xwe:A, 2xwe:B, 1y7v:A, 1y7v:B, 6ytp:AAA, 6ytp:BBB, 6ytr:AAA, 6ytr:BBB, 6yut:AAA, 6yut:BBB, 6yv3:AAA, 6yv3:BBB, 6z39:AAA, 6z39:BBB, 6z3i:BBB
40 8f9x:A 230 45 0.0317 0.0565 0.2889 8.8 8f9x:B, 8f9x:C, 8f9x:D, 8f9x:E, 8f9x:F, 8f9x:G, 8f9x:H, 8f9x:I, 8f9x:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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