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BioLiP
>protein
VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE
ELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEW
VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTS
GPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLI
DCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLF
DGGNIGLRRRQMQRVMALEDYEPWAATYGS

The query sequence (length=430) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3d9d:A 432 430 0.9977 0.9931 0.9977 0.0 2c0u:A, 2c0u:B, 2c0u:C, 2c0u:D, 2c12:A, 2c12:B, 2c12:C, 2c12:D, 2c12:E, 2c12:F, 3d9d:B, 3d9d:C, 3d9d:D, 3d9e:A, 3d9e:B, 3d9e:C, 3d9e:D, 3d9f:A, 3d9f:B, 3d9f:C, 3d9f:D, 3d9g:A, 3d9g:B, 3d9g:C, 3d9g:D, 3fcj:A, 3fcj:B, 3fcj:C, 3fcj:D, 2reh:A, 2reh:B, 2reh:C, 2reh:D, 2zaf:A, 2zaf:B, 2zaf:C, 2zaf:D
2 3mkh:A 426 430 0.4372 0.4413 0.4372 4.92e-128 3mkh:B, 3mkh:C, 3mkh:D
3 1ukw:A 379 408 0.2465 0.2797 0.2598 1.48e-23 1ukw:B
4 3mdd:A 385 416 0.2326 0.2597 0.2404 1.68e-23 3mdd:B, 3mde:A, 3mde:B, 1udy:A, 1udy:B, 1udy:C, 1udy:D
5 2a1t:C 388 421 0.2326 0.2577 0.2375 6.51e-23 2a1t:A, 2a1t:B, 2a1t:D, 1egc:A, 1egc:B, 1egc:C, 1egc:D, 1egd:A, 1egd:B, 1egd:C, 1egd:D, 1ege:A, 1ege:B, 1ege:C, 1ege:D, 4p13:A, 4p13:B, 4p13:C, 4p13:D, 8sgp:A, 8sgp:B, 8sgp:C, 8sgp:D, 1t9g:A, 1t9g:B, 1t9g:C, 1t9g:D
6 7w0j:E 382 392 0.2326 0.2618 0.2551 8.04e-23 8i4p:A, 8i4r:A, 7w0j:B, 7w0j:C, 7w0j:H
7 3pfd:C 369 397 0.2349 0.2737 0.2544 2.29e-22 3pfd:A, 3pfd:B, 3pfd:D
8 7p9a:A 380 387 0.2302 0.2605 0.2558 5.01e-22 7p98:A, 7p98:B, 7p9a:B, 7p9x:A, 7p9x:B, 7p9x:C, 7p9x:D
9 4iv6:B 383 356 0.2116 0.2376 0.2556 1.24e-18 4iv6:A
10 5ol2:F 378 376 0.2093 0.2381 0.2394 1.91e-17 5ol2:C
11 4n5f:A 378 353 0.2116 0.2407 0.2578 9.02e-17 4n5f:B
12 5lnx:D 374 411 0.2372 0.2727 0.2482 1.36e-16 5lnx:A, 5lnx:B, 5lnx:C, 5lnx:E, 5lnx:F, 5lnx:G, 5lnx:H
13 7y0a:C 387 352 0.1930 0.2145 0.2358 2.65e-15 1jqi:A, 1jqi:B, 8sgs:A, 8sgs:B, 8sgs:C, 8sgs:D, 2vig:A, 2vig:B, 2vig:C, 2vig:D, 2vig:E, 2vig:F, 2vig:G, 2vig:H, 7y0a:A, 7y0a:B, 7y0a:D, 7y0b:A, 7y0b:B, 7y0b:C, 7y0b:D
14 6fah:D 379 359 0.1884 0.2137 0.2256 5.86e-15 6fah:C
15 4l1f:A 380 412 0.2326 0.2632 0.2427 3.01e-14 4l1f:B
16 1buc:A 383 334 0.2000 0.2245 0.2575 6.45e-14 1buc:B
17 2dvl:A 370 344 0.2023 0.2351 0.2529 2.17e-12 2dvl:B
18 6af6:A 383 409 0.1930 0.2167 0.2029 2.51e-12 5zw2:A, 5zw7:A, 5zw8:A
19 8sgr:A 393 406 0.1930 0.2112 0.2044 1.24e-11 1ivh:A, 1ivh:B, 1ivh:C, 1ivh:D, 8sgr:B, 8sgr:C, 8sgr:D
20 5af7:B 391 373 0.1930 0.2123 0.2225 3.88e-11 5af7:A, 5ahs:A, 5ahs:B, 5ahs:C, 5ahs:E, 5ahs:F, 5ahs:D
21 4irn:A 378 317 0.1674 0.1905 0.2271 1.72e-10 4irn:B, 4irn:C, 4irn:D, 4irn:E, 4irn:F, 4irn:G, 4irn:H
22 6es9:A 545 377 0.2070 0.1633 0.2361 2.46e-10 6es9:B
23 7szv:A 372 339 0.1814 0.2097 0.2301 8.51e-10 7szv:B
24 2jif:A 381 361 0.1907 0.2152 0.2271 9.03e-10 2jif:C, 2jif:B, 2jif:D
25 8phe:A 551 364 0.2047 0.1597 0.2418 9.20e-10 8phe:B, 8phf:A, 8phf:B
26 7s7g:A 571 362 0.1953 0.1471 0.2320 9.41e-10 3b96:A, 2uxw:A
27 6u1v:B 389 378 0.1860 0.2057 0.2116 9.30e-09 6u1v:A, 6u1v:C, 6u1v:D
28 5idu:C 405 357 0.1953 0.2074 0.2353 3.39e-08 5idu:A, 5idu:B, 5idu:D
29 4m9a:B 376 353 0.2047 0.2340 0.2493 7.90e-08 4m9a:A
30 2z1q:B 549 371 0.1977 0.1548 0.2291 9.52e-08 2z1q:A
31 8ca1:B 589 361 0.1814 0.1324 0.2161 1.84e-07 8ca1:A
32 4x28:A 386 420 0.2093 0.2332 0.2143 2.48e-07 4x28:B
33 3mpi:C 395 409 0.2047 0.2228 0.2152 2.77e-07 3mpi:A, 3mpi:B, 3mpi:D, 3mpj:B, 3mpj:A, 3mpj:D, 3mpj:E, 3mpj:F, 3mpj:G
34 3owa:C 587 139 0.1023 0.0750 0.3165 6.62e-07 3owa:A, 3owa:B, 3owa:D
35 2d29:A 386 357 0.1977 0.2202 0.2381 8.64e-07 2d29:B
36 2pg0:A 380 365 0.2000 0.2263 0.2356 9.06e-07 2pg0:B
37 1rx0:A 384 369 0.1884 0.2109 0.2195 2.19e-06 1rx0:C, 1rx0:B, 1rx0:D
38 4kto:A 377 361 0.1930 0.2202 0.2299 2.03e-05 4kto:C, 4kto:B, 4kto:D
39 3gqt:C 385 128 0.0860 0.0961 0.2891 2.71e-05 3d6b:C, 3eon:C, 3gnc:A, 3gnc:B, 3gnc:C, 3gnc:D, 3gqt:A, 3gqt:B
40 5jsc:A 388 283 0.1558 0.1727 0.2367 2.73e-05 5jsc:B, 5jsc:C, 5jsc:D
41 8w0t:A 398 366 0.1814 0.1960 0.2131 3.46e-05 8w0t:B, 8w0t:C, 8w0t:D, 8w0u:A, 8w0u:B, 8w0u:C, 8w0u:D, 8w0z:A, 8w0z:B, 8w0z:C, 8w0z:D, 8w0z:E, 8w0z:F, 8w0z:G, 8w0z:H
42 3nf4:A 369 374 0.1744 0.2033 0.2005 3.71e-05 3nf4:B
43 2ix6:A 416 274 0.1488 0.1538 0.2336 9.69e-05 2ix5:A, 2ix5:B, 2ix5:C, 2ix5:D, 2ix6:C, 2ix6:F, 2ix6:B, 2ix6:E, 2ix6:D
44 3r7k:A 378 369 0.1767 0.2011 0.2060 0.002 3r7k:B, 3r7k:C, 3r7k:D
45 6cxt:B 372 304 0.1465 0.1694 0.2072 0.006 6cy8:B
46 7xp7:B 376 356 0.1791 0.2048 0.2163 0.009 7xp7:A, 7xp7:C, 7xp7:D
47 8hk0:B 379 124 0.0698 0.0792 0.2419 0.015 8hk0:A
48 6wy8:B 384 330 0.1721 0.1927 0.2242 0.017 6wy8:D, 6wy9:A
49 3oib:A 381 292 0.1442 0.1627 0.2123 0.042 3oib:B, 3p4t:A, 3p4t:B
50 6wy8:C 364 73 0.0512 0.0604 0.3014 0.061 6wy8:A, 6wy9:B
51 2eba:A 380 271 0.1465 0.1658 0.2325 0.092 2eba:D, 2eba:C, 2eba:E, 2eba:F, 2eba:G, 2eba:H, 2eba:I
52 4hr3:A 407 281 0.1465 0.1548 0.2242 0.10
53 3swo:A 388 68 0.0442 0.0490 0.2794 0.14 3swo:D, 3swo:B, 3swo:C
54 3sf6:A 387 44 0.0326 0.0362 0.3182 0.70
55 6sd8:X 503 45 0.0256 0.0219 0.2444 1.8 6sd8:A, 6sda:A, 6sda:B
56 2wbi:B 398 254 0.1209 0.1307 0.2047 5.4 2wbi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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