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BioLiP
>protein
VCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISL
LRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTEPVGSPALS
IGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSLSLSERVAIIKGTYE
PDE

The query sequence (length=243) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5dye:D 253 243 1.0000 0.9605 1.0000 5.54e-174 5c5x:A, 5c5x:B, 5c5x:C, 5c5x:D, 5c5x:E, 5c5x:H, 3d9s:C, 3d9s:D, 5dye:A, 5dye:B, 5dye:C
2 4nef:A 239 235 0.6626 0.6736 0.6851 7.11e-115
3 8sjx:A 220 221 0.5226 0.5773 0.5747 9.23e-88 8sjy:A
4 8ct2:D 247 236 0.4774 0.4696 0.4915 5.05e-73 8ct2:B, 8ct2:C, 8ct2:A, 8cte:O, 8cte:S, 8cte:R, 8cte:M, 7uze:D, 7uze:B, 7uze:C, 7uze:A
5 8uy6:A 244 210 0.3128 0.3115 0.3619 5.13e-25 3nka:A, 2o9e:A, 8uy6:C, 8uy6:E, 8uy6:G, 8uy6:I, 8uy6:K, 8uy6:M, 8uy6:O
6 2evu:A 245 248 0.3663 0.3633 0.3589 5.44e-24 2f2b:A
7 5bn2:A 260 177 0.2510 0.2346 0.3446 1.21e-21
8 1fx8:A 254 245 0.3169 0.3031 0.3143 4.50e-15
9 8c9h:A 253 241 0.2757 0.2648 0.2780 1.58e-13 8c9h:B, 8c9h:C, 8c9h:D, 8c9h:E, 8c9h:F, 8c9h:G, 8c9h:H, 6n1g:A, 6n1g:C, 6n1g:B, 6n1g:D, 6qzi:A, 6qzj:A
10 8jy6:A 242 238 0.2798 0.2810 0.2857 6.83e-10 8jy6:B, 8jy6:C, 8jy6:D, 8jy8:A, 8jy8:B, 8jy8:C, 8jy8:D
11 3c02:A 242 247 0.2757 0.2769 0.2713 2.34e-08
12 6f7h:C 253 244 0.2551 0.2451 0.2541 5.61e-06 6f7h:A, 6f7h:B
13 7shw:B 259 34 0.0412 0.0386 0.2941 0.52 7shw:A
14 8ouw:4 619 108 0.1152 0.0452 0.2593 1.0
15 1lvl:A 458 37 0.0576 0.0306 0.3784 2.4
16 6ob0:A 442 36 0.0617 0.0339 0.4167 4.3 6e7k:A, 6e7k:B, 6ob0:B, 6ob0:C, 6ob0:D
17 7qt1:C 452 99 0.1070 0.0575 0.2626 7.8 7qsv:A, 7qsv:B, 7qsv:C, 7qsv:D, 7qsv:E, 7qsv:F, 7qsv:G, 7qsv:H, 7qsx:A, 7qsx:F, 7qsx:B, 7qsx:E, 7qsx:C, 7qsx:D, 7qsx:G, 7qsx:H, 7qsy:A, 7qsy:C, 7qsy:E, 7qsy:G, 7qsz:A, 7qsz:B, 7qsz:C, 7qsz:D, 7qt1:A, 7qt1:E, 7qt1:G, 7qvi:A, 7qvi:B, 7qvi:C, 7qvi:D, 7qvi:E, 7qvi:F, 7qvi:G, 7qvi:H, 7qvi:I, 7qvi:J, 7qvi:K, 7qvi:L, 7qvi:M, 7qvi:N, 7qvi:O, 7qvi:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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