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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDSGILGGYI
APDNLTITLSVGHSLFDERFGLAPQMPKKLQKMTRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVR
WKREGFISDHAARSKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPL
KEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPEGKGIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTNSGQLDMGLL
FVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKDANDYLGSALLR

The query sequence (length=375) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2y4e:A 384 374 0.9920 0.9688 0.9947 0.0 3o72:A, 3o72:B, 3o72:C, 3o72:D, 2y4e:B, 2y4f:A, 2y4f:B
2 6jbn:A 391 372 0.6187 0.5934 0.6237 7.81e-168 6jbn:B
3 8rgs:A 366 370 0.3947 0.4044 0.4000 4.19e-84 4grc:A, 6i43:A, 6i43:B, 6i7c:A, 6i7c:B, 6i7z:A, 6i7z:B, 6i8e:A, 6i8e:B, 6i8i:A, 6i8i:B, 6i8j:A, 6i8j:B, 6i8k:A, 6i8k:B, 6i8o:A, 6i8o:B, 6i8p:A, 6i8p:B, 6i8q:A, 6i8q:B, 6i91:A, 6i91:B, 6ibn:A, 6ibn:B, 8olh:A, 8olh:B, 8olp:A, 8olp:B, 8omc:A, 8omc:B, 8pxp:A, 8pxp:B, 6q31:A, 6q31:B, 6q34:A, 6q34:B, 6q3d:A, 6q3d:B, 6q3e:A, 6q3e:B, 8rgs:B, 8rgw:A, 8rgw:B, 8rgy:A, 8rgy:B, 6tb8:A, 6tb8:B
4 7dlk:A 363 375 0.3840 0.3967 0.3840 4.10e-79 7dlk:B, 7dlk:C, 7dlk:D, 7dlk:E, 7dlk:F, 7e5q:A, 7e5q:B, 6kmm:A, 6kmm:B, 6kmm:C, 6kmm:D, 6kmm:E, 6kmm:F, 6kmn:A, 6kmn:B, 6kmn:C, 6kmn:D, 7pkx:A, 7pkx:B, 7pl0:A, 7pl0:B, 7pl0:C, 7pl0:D
5 8fjq:B 361 373 0.3867 0.4017 0.3887 1.25e-64 8fjq:A, 8fjr:A, 8fjr:B, 5jxu:A, 5jxu:B, 7rmu:A
6 6qzo:A 361 371 0.3653 0.3795 0.3693 4.23e-61 6qzo:B, 6qzo:C, 6qzo:D, 6qzo:E, 6qzo:F, 6qzo:G, 6qzo:H
7 4gt2:A 371 378 0.3360 0.3396 0.3333 2.93e-51 4gt2:B, 4gt2:E, 4gt2:G, 6gzw:A, 6gzw:B, 5map:A, 5map:B, 5mjh:A, 5mjh:B
8 4gs1:B 376 305 0.2853 0.2846 0.3508 1.48e-45 4gs1:A
9 8ck9:A 374 290 0.2853 0.2861 0.3690 5.01e-41
10 5fw4:A 368 370 0.3067 0.3125 0.3108 8.99e-40 5fw4:B
11 7anv:A 467 214 0.1573 0.1263 0.2757 1.40e-09
12 2iiz:A 306 142 0.1200 0.1471 0.3169 7.37e-07
13 5de0:B 298 236 0.1627 0.2047 0.2585 7.71e-07 5de0:A, 5de0:C, 5de0:D
14 7ylo:A 311 329 0.2080 0.2508 0.2371 1.36e-06 7ylo:B
15 7o9j:B 307 241 0.1680 0.2052 0.2614 1.20e-05 7o9j:A, 7o9l:A, 7o9l:B, 7odz:A, 7odz:B, 8ohy:A
16 7yzt:A 306 187 0.1280 0.1569 0.2567 1.79e-05 7yzt:B, 7yzt:C
17 8u4z:A 313 90 0.0800 0.0958 0.3333 5.12e-05
18 7qyq:B 284 200 0.1333 0.1761 0.2500 2.86e-04 7qyq:A, 7qyq:C, 7qyq:D, 7qyz:A, 7qza:A, 7qza:B, 7qza:C, 7qza:D, 7qza:E, 7qza:F, 7qza:G, 7qza:H
19 4gu7:A 310 182 0.1147 0.1387 0.2363 6.27e-04 4gu7:B, 4gu7:C, 4gu7:D, 8pws:A, 8pws:B, 8pws:C, 8pws:D, 8pws:E, 8pws:F, 8pwy:A, 8pwy:B, 8pwy:C, 8pwy:D, 8pwy:E, 8pwy:F, 7qze:A, 7qze:B, 7qze:C, 7qze:D, 7qze:E, 7qze:F, 7qzf:A, 7qzf:B, 7qzf:C, 7qzf:D, 7qzf:E, 7qzf:F, 7qzg:A, 7qzg:B, 7qzg:C, 7qzg:D, 7qzg:E, 7qzg:F, 7qzh:A, 7qzh:B, 7qzh:C, 7qzh:D, 7qzh:E, 7qzh:F, 8rwy:A, 8rwy:B, 8rwy:C, 8rwy:D, 8rwy:E, 8rwy:F, 6yr4:A, 6yr4:B, 6yr4:C, 6yr4:D, 6yr4:E, 6yr4:F, 6yrc:A, 6yrc:B, 6yrc:C, 6yrc:D, 6yrc:E, 6yrc:F, 6yrd:A, 6yrd:B, 6yrd:C, 6yrd:D, 6yrd:E, 6yrd:F, 6yrj:A, 6yrj:B, 6yrj:C, 6yrj:D, 6yrj:E, 6yrj:F, 7zmj:A, 7zmj:B, 7zmj:C, 7zmj:D, 7zmj:E, 7zmj:F
20 7bok:A 309 168 0.1040 0.1262 0.2321 6.90e-04 7bok:B, 7bok:C, 7bok:D, 7bok:E, 7bok:F
21 4au9:A 448 220 0.1307 0.1094 0.2227 8.72e-04 5ag0:A, 5ag0:B, 5ag1:A, 5ag1:B, 4au9:B, 5ikd:A, 5ikg:A, 4uzi:A, 4uzi:B, 4w7j:A, 4w7j:B, 4w7j:C, 4w7j:D, 4w7k:A, 4w7k:B, 4w7l:A, 4w7l:B, 4w7m:A, 4w7m:B, 4w7n:A, 4w7n:B, 4w7o:A
22 7d8m:A 451 227 0.1493 0.1242 0.2467 0.001
23 5vj0:D 300 243 0.1520 0.1900 0.2346 0.002 5gt2:A, 5gt2:B, 5gt2:C, 5gt2:D, 5vj0:A, 5vj0:B, 5vj0:C
24 3afv:A 439 185 0.1333 0.1139 0.2703 0.004 2d3q:A, 2d3q:B, 3mm1:A, 3mm2:A, 3mm3:A, 3vxi:A, 3vxj:A
25 3qns:A 311 264 0.1573 0.1897 0.2235 0.005 4hov:A, 4hov:B, 4hov:C, 3qnr:A, 3qnr:B, 3qnr:C, 3vec:A, 3vec:B, 3vec:C, 3ved:A, 3ved:B, 3ved:C, 3vee:A, 3vee:B, 3vee:C, 3vef:A, 3vef:B, 3vef:C, 3veg:A, 3veg:B, 3veg:C
26 6fsk:A 484 168 0.1147 0.0888 0.2560 0.005 6fsk:B, 6fsl:A, 6fsl:B
27 8re3:A 445 155 0.1067 0.0899 0.2581 0.028 8re2:A, 8re3:B
28 6fiy:B 303 182 0.1120 0.1386 0.2308 0.063 6fiy:A, 6fks:A, 6fks:B, 6fkt:A, 6fkt:B, 6fl2:A, 6fl2:B, 6rpd:A, 6rpd:B, 6rpe:A, 6rpe:B, 6rqy:A, 6rqy:B, 6rr1:A, 6rr1:B, 6rr4:A, 6rr4:B, 6rr5:A, 6rr5:B, 6rr6:A, 6rr6:B, 6rr8:A, 6rr8:B
29 4g2c:B 463 120 0.0907 0.0734 0.2833 0.13 4g2c:A
30 5c2i:A 468 114 0.0853 0.0684 0.2807 0.40 5c2i:B, 5c2i:C, 5c2i:D
31 8wgh:K 83 49 0.0480 0.2169 0.3673 2.2
32 5ysz:A 327 92 0.0533 0.0612 0.2174 3.3
33 6sl5:K 84 49 0.0480 0.2143 0.3673 4.6
34 8j6z:K 84 46 0.0453 0.2024 0.3696 6.7 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
35 2zy2:A 521 56 0.0560 0.0403 0.3750 7.4
36 2x98:A 430 37 0.0427 0.0372 0.4324 8.3 2x98:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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