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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VANKVCLIVIDGWGVSEDPYGNAILNAQTPVMDKLCSGNWAQIEAHGLHVGLPEGLMGNSEVGHLNIGAGRVIYQDIVRI
NLAVKNNKFVTNESLVDACDRAKNGNGRLHLAGLVSDGGVHSHIDHMFALVKAIKELGVPELYLHFYGDGRDTSPNSGVG
FLEQTLEFLEKTTGYGKLATVVGRYYAMDRDNRWERINVAYEAMIGGVGETSDEAGVVEVVRKRYAADETDEFLKPIILQ
GEKGRVQNDDTIIFFDYRADRMREISAAMGMKLAHPSNLQVYGMTQYKAEFPFKSLFPPASNKNVLAEWLAEQKVSQFHC
AETEKYAHVTFFFNGGLEKQFEGEERCLVPSPKVATYDLQPEMSAAGVADKMIEQLEAGTHPFIMCNFAPPDMVGHTGVY
EAAVKACEATDIAIGRIYEATQKHGYSLMVTADHGNAEKMKAPDGGKHTAHTCYRVPLTLSHPGFKFVDPADRHPALCDV
APTVLAIMGLPQPAEMTGVSIVQKI

The query sequence (length=505) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7tl7:A 531 513 1.0000 0.9510 0.9844 0.0 5kgl:A, 5kgl:B, 5kgm:A, 5kgm:B, 5kgn:A, 5kgn:B, 7knf:A, 7knf:B, 7kng:A, 7kng:B, 7tl7:B, 7tl7:C, 7tl7:D
2 1o98:A 509 515 0.4277 0.4244 0.4194 4.23e-139 1ejj:A, 1eqj:A, 1o99:A
3 5vpu:A 509 510 0.4396 0.4361 0.4353 4.70e-138
4 2ify:A 508 518 0.4277 0.4252 0.4170 6.41e-135
5 4nwj:A 504 507 0.4059 0.4067 0.4043 4.81e-126 4my4:A, 4nwx:A, 4qax:A, 7tl8:A
6 3nvl:A 549 532 0.3109 0.2860 0.2951 4.11e-63 3nvl:B
7 3igy:B 549 532 0.3168 0.2914 0.3008 3.85e-55 3igz:B
8 7p24:AAA 494 104 0.0574 0.0587 0.2788 0.056
9 1ajb:A 449 197 0.0871 0.0980 0.2234 0.63 1ajb:B, 1ajc:A, 1ajc:B, 1ajd:A, 1ajd:B, 1alh:A, 1alh:B, 1ali:A, 1ali:B, 1alj:A, 1alj:B, 1alk:A, 1alk:B, 1ani:A, 1ani:B, 1anj:A, 1anj:B, 2anh:A, 2anh:B, 1b8j:A, 1b8j:B, 3bdh:A, 3bdh:B, 5c66:A, 5c66:B, 3cmr:A, 3cmr:B, 3dpc:B, 3dpc:A, 3dyc:A, 3dyc:B, 1ed8:A, 1ed8:B, 1ed9:A, 1ed9:B, 1elx:A, 1elx:B, 1ely:A, 1ely:B, 1elz:A, 1elz:B, 1ew8:A, 1ew8:B, 1ew9:A, 1ew9:B, 2g9y:A, 2g9y:B, 2ga3:A, 2ga3:B, 1hjk:A, 1hjk:B, 1hqa:A, 1hqa:B, 1kh4:A, 1kh4:B, 1kh5:A, 1kh5:B, 1kh7:A, 1kh7:B, 1kh9:A, 1kh9:B, 1khj:A, 1khj:B, 1khk:A, 1khk:B, 1khl:A, 1khl:B, 1khn:A, 1khn:B, 4km4:A, 4km4:B, 3tg0:A, 3tg0:B, 3tg0:C, 3tg0:D, 5tpq:A, 5tpq:B, 1ura:A, 1ura:B, 1urb:A, 1urb:B, 1y6v:A, 1y6v:B, 1y7a:A, 1y7a:B, 4yr1:A, 4yr1:B
10 7wxp:A 311 106 0.0554 0.0900 0.2642 1.8
11 5mlt:A 454 55 0.0317 0.0352 0.2909 1.9 5swa:A, 5swa:B, 5swb:A, 5swb:C, 5swb:D, 5swb:G
12 7mhs:E 489 120 0.0614 0.0634 0.2583 2.9
13 2zkt:A 330 66 0.0356 0.0545 0.2727 3.5
14 2zkt:B 381 66 0.0356 0.0472 0.2727 3.7
15 6pt4:B 473 61 0.0337 0.0359 0.2787 3.7 6pt4:A, 6pt6:B, 6pt6:A, 6pt9:A, 6pt9:B, 6ptk:A, 6ptk:B, 6ptk:C, 6ptk:D
16 7fi0:A 308 90 0.0455 0.0747 0.2556 4.8 7fi1:A
17 5m3e:A 152 19 0.0218 0.0724 0.5789 7.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218