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BioLiP
>protein
VAGLVPCKDSKEFSRRLDLSVKKLEQRLKKYEPGTPPYLAIQKSIETTKIRFDRYAKGGLLCGKDGLPHLITDGRLSHAT
EFIIPGLLFLYINGWIGWVGRAYLIAIRSSDKPAEKEIILDIPLALGFMSSGFLWPLSAWKEFTSGELLVDANEVTVS

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7y5e:FN 158 158 1.0000 1.0000 1.0000 2.40e-114 7y5e:F2, 7y7a:F7, 7y7a:Fo
2 8wm6:F 161 158 0.7025 0.6894 0.7025 2.38e-83 8wmj:F, 8wmv:F, 8wmw:F
3 7y7b:F 160 158 0.7089 0.7000 0.7089 6.66e-83 7y8a:F
4 7dr0:F 161 158 0.6139 0.6025 0.6139 4.15e-70 7dr1:F, 7dr2:aF, 7dr2:bF, 7dr2:cF, 7dr2:dF
5 6l4u:F 161 158 0.5759 0.5652 0.5759 1.88e-68
6 8htu:F 161 158 0.5949 0.5839 0.5949 3.78e-65 7ksq:F, 7kux:F, 6l35:F, 7xqp:F
7 7blz:F 155 155 0.5633 0.5742 0.5742 8.12e-64 6fos:F, 5zgb:F, 5zgh:F
8 5l8r:F 154 150 0.5696 0.5844 0.6000 2.30e-63 7dkz:F, 4rku:F, 4y28:F, 6yac:F, 6yez:F, 6zoo:F, 6zxs:F
9 8bcv:F 158 155 0.5570 0.5570 0.5677 1.07e-61 7ew6:F, 7ewk:F, 7f9o:F, 7f9o:j
10 7wfe:BF 154 150 0.5506 0.5649 0.5800 2.02e-61 8j6z:F, 8j7a:F, 8j7b:F, 7wfd:AF, 7wg5:AF, 7wg5:BF, 8wgh:F
11 5zji:F 158 155 0.5506 0.5506 0.5613 4.89e-61
12 8wey:F 158 155 0.5127 0.5127 0.5226 6.09e-59
13 6ly5:f 162 149 0.5316 0.5185 0.5638 6.40e-59 3lw5:F, 2o01:F, 2wsc:F, 2wse:F, 2wsf:F, 4xk8:F, 4xk8:f
14 7yca:F 165 157 0.5380 0.5152 0.5414 1.78e-58
15 6igz:F 163 162 0.5000 0.4847 0.4877 1.69e-53
16 6qph:F 163 162 0.5127 0.4969 0.5000 1.44e-52 6rhz:F, 6sl5:F, 6yxr:F
17 7a4p:F 165 162 0.5063 0.4848 0.4938 1.88e-52 6zzx:F, 6zzy:F
18 4fe1:F 141 158 0.5253 0.5887 0.5253 8.25e-52 7fix:F1, 7fix:F2, 7fix:F3, 1jb0:F, 6k33:bF, 6k33:aF, 6k33:cF, 7m75:F, 7m76:F, 7m78:F, 3pcq:F, 6pfy:Q, 6pfy:F, 6pfy:d, 6pgk:Q, 6pgk:F, 6pgk:d, 6tra:F, 6trc:F, 6trc:f, 6trc:6, 6trd:F, 6trd:f, 6trd:6, 5zf0:F1, 5zf0:F2, 5zf0:F3, 5zf0:F4, 5zf0:F6, 5zf0:F5
19 7bgi:F 165 162 0.5000 0.4788 0.4877 9.69e-51 7blx:F, 7d0j:F, 7dz7:F, 7dz8:F, 8h2u:F, 6ijj:F, 6ijo:F, 6jo5:F, 6jo6:F, 7r3k:F, 7wyi:F, 7wzn:F, 7zq9:F, 7zqc:F, 7zqd:F, 7zqd:F2
20 6kif:F 136 158 0.5063 0.5882 0.5063 3.71e-49 6kif:R, 6kif:j, 6kig:F, 6kig:R, 6kig:j
21 8cmo:F 165 162 0.4810 0.4606 0.4691 5.62e-49
22 7qco:F 141 157 0.4810 0.5390 0.4841 1.60e-44 7qco:O, 7qco:o, 7qco:f
23 6vpv:F 141 131 0.4494 0.5035 0.5420 6.68e-43 6vpv:f, 6vpv:6
24 6hqb:F 143 131 0.4241 0.4685 0.5115 4.79e-42 8am5:f, 8asl:f, 8asp:f, 4kt0:F, 6nwa:F, 6nwa:f, 6nwa:Q, 5oy0:F, 5oy0:f, 5oy0:6, 7umh:F, 7umh:Q, 7umh:f, 6uzv:F, 6uzv:6, 6uzv:f
25 6jeo:bF 141 131 0.4051 0.4539 0.4885 4.00e-38 6jeo:aF, 6jeo:cF, 6jeo:dF, 6k61:F, 6k61:f, 6tcl:F1, 6tcl:F2, 6tcl:F, 6tcl:FF, 7y3f:F
26 8jze:f 184 153 0.4051 0.3478 0.4183 1.89e-36 8jzf:f
27 8jjr:f 169 150 0.3797 0.3550 0.4000 1.51e-34
28 8jw0:f 185 156 0.3797 0.3243 0.3846 2.20e-33
29 7f4v:aF 151 152 0.3734 0.3907 0.3882 2.14e-28 7f4v:bF, 7f4v:cF
30 7lx0:Q 135 103 0.2975 0.3481 0.4563 6.54e-27 7lx0:f, 7lx0:F, 6pnj:Q, 6pnj:f, 6pnj:F
31 4l6v:F 125 82 0.2722 0.3440 0.5244 4.33e-26 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
32 7s3d:F 124 153 0.3608 0.4597 0.3725 1.49e-23 7s3d:Q, 7s3d:f
33 7dwq:F 103 123 0.2848 0.4369 0.3659 7.47e-16
34 6a2d:A 519 81 0.1456 0.0443 0.2840 4.9 6a2c:A, 6a2c:B, 6a2d:B
35 6i0d:4 384 54 0.1013 0.0417 0.2963 5.9 6i0d:E, 6i1p:E, 3i9v:4, 3iam:4, 3ias:4, 3ias:D, 3ias:M, 3ias:V, 3m9s:4, 3m9s:D, 6q8o:4, 6q8o:E, 6q8w:4, 6q8w:E, 6q8x:4, 6q8x:E, 2ybb:4
36 8zjf:B 510 73 0.1329 0.0412 0.2877 5.9 3v4p:B, 3v4p:D, 3v4v:B, 3v4v:D
37 7lt2:A 387 52 0.1076 0.0439 0.3269 6.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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