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BioLiP
>protein
VAGLTPCKESKGFAKRQKQEIKKLEGRLKLYAPDSAPALAINATIEKTKRRFEFYGNQGLLCGTDGLPHLIVDGDQAHLG
EFVYPGLVFLYIAGWIGWVGRAYLIDVRTSKKPTEKEIIIDVPLALRIMSKGLTWPVAAIGELRSGKLVEKSSNITVSPR

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8htu:F 161 160 1.0000 0.9938 1.0000 1.78e-116 7ksq:F, 7kux:F, 6l35:F, 7xqp:F
2 5l8r:F 154 152 0.7063 0.7338 0.7434 1.82e-82 7dkz:F, 4rku:F, 4y28:F, 6yac:F, 6yez:F, 6zoo:F, 6zxs:F
3 6ly5:f 162 150 0.6625 0.6543 0.7067 1.90e-77 3lw5:F, 2o01:F, 2wsc:F, 2wse:F, 2wsf:F, 4xk8:F, 4xk8:f
4 7wfe:BF 154 152 0.6625 0.6883 0.6974 1.33e-76 8j6z:F, 8j7a:F, 8j7b:F, 7wfd:AF, 7wg5:AF, 7wg5:BF, 8wgh:F
5 5zji:F 158 155 0.6875 0.6962 0.7097 9.92e-76
6 8bcv:F 158 155 0.6562 0.6646 0.6774 2.65e-73 7ew6:F, 7ewk:F, 7f9o:F, 7f9o:j
7 7yca:F 165 159 0.6375 0.6182 0.6415 7.51e-70
8 7y7b:F 160 160 0.6188 0.6188 0.6188 1.38e-68 7y8a:F
9 8wm6:F 161 160 0.6125 0.6087 0.6125 1.40e-68 8wmj:F, 8wmv:F, 8wmw:F
10 7dr0:F 161 160 0.5813 0.5776 0.5813 9.63e-66 7dr1:F, 7dr2:aF, 7dr2:bF, 7dr2:cF, 7dr2:dF
11 7y5e:FN 158 158 0.5875 0.5949 0.5949 3.32e-65 7y5e:F2, 7y7a:F7, 7y7a:Fo
12 8cmo:F 165 164 0.6062 0.5879 0.5915 1.48e-64
13 7bgi:F 165 164 0.6062 0.5879 0.5915 2.35e-64 7blx:F, 7d0j:F, 7dz7:F, 7dz8:F, 8h2u:F, 6ijj:F, 6ijo:F, 6jo5:F, 6jo6:F, 7r3k:F, 7wyi:F, 7wzn:F, 7zq9:F, 7zqc:F, 7zqd:F, 7zqd:F2
14 6igz:F 163 162 0.5563 0.5460 0.5494 1.41e-62
15 7a4p:F 165 164 0.5750 0.5576 0.5610 5.08e-61 6zzx:F, 6zzy:F
16 6l4u:F 161 160 0.5563 0.5528 0.5563 7.98e-61
17 6qph:F 163 162 0.5687 0.5583 0.5617 7.26e-60 6rhz:F, 6sl5:F, 6yxr:F
18 7blz:F 155 156 0.5125 0.5290 0.5256 1.03e-57 6fos:F, 5zgb:F, 5zgh:F
19 8wey:F 158 157 0.4938 0.5000 0.5032 2.44e-56
20 4fe1:F 141 162 0.5188 0.5887 0.5123 6.24e-50 7fix:F1, 7fix:F2, 7fix:F3, 1jb0:F, 6k33:bF, 6k33:aF, 6k33:cF, 7m75:F, 7m76:F, 7m78:F, 3pcq:F, 6pfy:Q, 6pfy:F, 6pfy:d, 6pgk:Q, 6pgk:F, 6pgk:d, 6tra:F, 6trc:F, 6trc:f, 6trc:6, 6trd:F, 6trd:f, 6trd:6, 5zf0:F1, 5zf0:F2, 5zf0:F3, 5zf0:F4, 5zf0:F6, 5zf0:F5
21 6kif:F 136 160 0.4813 0.5662 0.4813 1.91e-46 6kif:R, 6kif:j, 6kig:F, 6kig:R, 6kig:j
22 7qco:F 141 159 0.4688 0.5319 0.4717 4.35e-44 7qco:O, 7qco:o, 7qco:f
23 6hqb:F 143 159 0.4562 0.5105 0.4591 2.20e-43 8am5:f, 8asl:f, 8asp:f, 4kt0:F, 6nwa:F, 6nwa:f, 6nwa:Q, 5oy0:F, 5oy0:f, 5oy0:6, 7umh:F, 7umh:Q, 7umh:f, 6uzv:F, 6uzv:6, 6uzv:f
24 6vpv:F 141 160 0.4625 0.5248 0.4625 9.52e-42 6vpv:f, 6vpv:6
25 6jeo:bF 141 159 0.4313 0.4894 0.4340 2.72e-38 6jeo:aF, 6jeo:cF, 6jeo:dF, 6k61:F, 6k61:f, 6tcl:F1, 6tcl:F2, 6tcl:F, 6tcl:FF, 7y3f:F
26 8jjr:f 169 150 0.4062 0.3846 0.4333 3.15e-33
27 8jze:f 184 153 0.4062 0.3533 0.4248 2.56e-32 8jzf:f
28 4l6v:F 125 81 0.3000 0.3840 0.5926 3.68e-31 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
29 8jw0:f 185 156 0.4000 0.3459 0.4103 2.37e-29
30 7f4v:aF 151 155 0.4125 0.4371 0.4258 4.66e-29 7f4v:bF, 7f4v:cF
31 7lx0:Q 135 157 0.3688 0.4370 0.3758 6.55e-26 7lx0:f, 7lx0:F, 6pnj:Q, 6pnj:f, 6pnj:F
32 7s3d:F 124 101 0.2875 0.3710 0.4554 4.66e-23 7s3d:Q, 7s3d:f
33 7dwq:F 103 122 0.2938 0.4563 0.3852 2.37e-16
34 4hk5:D 380 75 0.1562 0.0658 0.3333 0.76 4hk5:A, 4hk5:B, 4hk5:C, 4hk6:A, 4hk6:B, 4hk6:C, 4hk6:D, 4hk7:A, 4hk7:B, 4hk7:C, 4hk7:D, 4lak:A, 4lak:B, 4lal:A, 4lal:B, 4lal:C, 4lal:D, 4lam:A, 4lam:B, 4lao:A, 4lao:B
35 6a2d:A 519 130 0.2000 0.0617 0.2462 1.4 6a2c:A, 6a2c:B, 6a2d:B
36 4im7:A 483 81 0.1375 0.0455 0.2716 2.1
37 6i34:B 954 50 0.1062 0.0178 0.3400 4.1 6i33:A, 6i34:A, 6i34:C, 6i34:D, 6i35:A, 6i35:B, 6i35:C, 6i35:D
38 6i33:B 925 50 0.1062 0.0184 0.3400 4.9
39 8wey:5 183 62 0.1187 0.1038 0.3065 6.7 7blz:2, 6fos:2, 6fos:3, 8wey:2, 5zgb:2, 5zgb:5, 5zgh:2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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