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BioLiP
>protein
VAGAVIDGAGLGFDVLKTVLEALGNVKRKIAVGIDNESGKTWTAMNTYFRSGTSDIVLPHKVAHGKALLYNGQKNRGPVA
TGVVGVIAYSMSDGNTLAVLFSVPYDYNWYSNWWNVRVYKGQKRADQRMYEELYYHRSPFRGDNGWHSRGLGYGLKSRGF
MNSSGHAILEIHVTKA

The query sequence (length=176) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4tsl:A 178 176 1.0000 0.9888 1.0000 1.08e-129 5gwf:B, 5gwf:D, 4tsl:B, 4tsn:A, 4tsn:B, 4tsn:C, 4tsn:D, 4tso:A, 4tso:B, 4tsp:A, 4tsp:B, 4tsq:A, 4tsq:E, 4tsq:B, 4tsq:C, 4tsq:D, 4tsq:F, 4tsy:A, 4tsy:B, 4tsy:C, 4tsy:D
2 1o72:A 175 175 0.6250 0.6286 0.6286 4.88e-82 1o72:B
3 3gbf:A 415 40 0.0852 0.0361 0.3750 2.2
4 9b1l:A 529 33 0.0568 0.0189 0.3030 4.1 9b1g:A, 9b1h:A, 9b1i:A, 9b1j:A, 9b1k:A, 9b1m:A, 9b1n:A, 9b1o:A
5 6lce:A 407 72 0.1307 0.0565 0.3194 5.8 6lcf:A, 6lcf:B
6 3vyt:C 336 34 0.0739 0.0387 0.3824 8.6 3vys:C, 3wjp:A, 3wjq:A, 3wjr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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