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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TYTTRQIGAKNTLEYKVYIEKDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFV
RNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDI
NDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDSKGI
DLTNVTLPDTPTYSKAASDAIPPASLKADAPIDKSIDKWFF

The query sequence (length=281) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ik0:B 286 281 0.9964 0.9790 0.9964 0.0 117e:A, 117e:B, 1e6a:A, 1e6a:B, 1e9g:A, 1e9g:B, 1huj:A, 1huj:B, 1huk:A, 1huk:B, 2ihp:A, 2ihp:B, 2ik0:A, 2ik1:A, 2ik1:B, 2ik2:A, 2ik2:B, 2ik4:A, 2ik4:B, 2ik6:A, 2ik6:B, 2ik7:A, 2ik7:B, 2ik9:A, 1m38:A, 1m38:B, 8prk:A, 8prk:B, 1wgi:A, 1wgi:B, 1wgj:A, 1wgj:B, 1ypp:A, 1ypp:B
2 4qlz:A 284 279 0.5302 0.5246 0.5341 3.17e-104 4qlz:B
3 7btn:A 275 285 0.5338 0.5455 0.5263 4.32e-101
4 8qpt:B 289 246 0.4484 0.4360 0.5122 1.77e-86 8qpt:A
5 5cuv:A 382 241 0.4093 0.3010 0.4772 3.79e-63 5cuu:A, 5cuu:B, 5cuv:B, 5cux:A, 5cux:B
6 5cuy:D 396 215 0.3630 0.2576 0.4744 1.15e-62 5c5v:A, 5c5v:B, 5cuy:A, 5cuy:B, 5cuy:C
7 5wru:B 308 206 0.3096 0.2825 0.4223 2.47e-43
8 5wrt:A 235 233 0.3310 0.3957 0.3991 2.51e-43 5wrt:B
9 3q46:A 178 151 0.1744 0.2753 0.3245 7.40e-14 3i98:A, 3i98:B, 3i98:C, 3i98:D, 3i98:E, 3i98:F, 3q3l:A, 3q3l:B, 3q3l:C, 3q3l:D, 3q3l:E, 3q3l:F, 3q4w:A, 3q5v:A, 3q5v:B, 3r5u:A, 3r5u:B, 3r5v:A, 3r5v:B, 3r5v:C, 3r5v:D, 3r5v:E, 3r5v:F, 5ucq:A, 5ucq:B, 5ucq:C
10 1qez:A 169 136 0.1530 0.2544 0.3162 2.27e-11 1qez:F, 1qez:B, 1qez:C, 1qez:D, 1qez:E
11 3ej2:A 182 168 0.1815 0.2802 0.3036 1.12e-09 3eiy:A, 3ej0:A
12 2bqy:A 170 185 0.1708 0.2824 0.2595 2.61e-09
13 4z71:B 163 151 0.1352 0.2331 0.2517 2.57e-06 5kde:A, 5kdf:A, 1wcf:A, 4z70:A, 4z70:B, 4z70:C, 4z71:A, 4z71:C, 4z72:A, 4z73:A, 4z73:B, 4z73:C, 4z73:D, 4z73:F, 4z73:G, 4z73:E, 4z73:H, 4z73:I, 4z73:J, 4z73:K, 4z73:L, 4z74:A, 4z74:B, 4z74:C, 4z74:D, 4z74:F, 4z74:G, 4z74:E, 4z74:H, 4z74:I, 4z74:J, 4z74:K, 4z74:L
14 5tea:B 174 134 0.1281 0.2069 0.2687 7.19e-06 5tea:A, 5tea:C, 5tea:D, 5tea:E, 5tea:F
15 6k21:A 173 183 0.1744 0.2832 0.2678 9.01e-06 6k27:A, 6k27:B, 6k27:C, 6k27:D, 6k27:E, 6k27:F, 6k27:G, 6k27:H, 6ki8:A, 6ki8:B, 6ki8:C
16 3tr4:B 171 185 0.1815 0.2982 0.2757 1.17e-05 3tr4:A, 3tr4:C, 3tr4:D, 3tr4:E, 3tr4:F
17 2au6:A 175 80 0.0890 0.1429 0.3125 0.016 2au7:A, 2au8:A, 2au9:A, 2auu:A, 1i40:A, 1i6t:A, 1ino:A, 1ipw:A, 1ipw:B, 1jfd:A, 1jfd:B, 1mjw:A, 1mjw:B, 1mjx:A, 1mjx:B, 1obw:A, 1obw:B, 1obw:C, 4um4:A, 4um4:B, 4um4:C
18 7lub:B 462 93 0.0925 0.0563 0.2796 1.7 7lub:A
19 2wle:C 211 79 0.0783 0.1043 0.2785 2.3 2wle:A, 2wle:B, 2wlf:A, 2wlf:C, 2wlf:B, 2wlg:A, 2wlg:C, 2wlg:B
20 6d0p:A 288 117 0.1103 0.1076 0.2650 2.5 6d0p:B, 6d0p:C, 6d0p:D
21 7rgd:A 519 56 0.0712 0.0385 0.3571 2.8 7res:A, 7res:B, 7res:C, 7res:D, 7res:E, 7res:F, 7res:G, 7res:H, 7rfe:A, 7rfe:B, 7rfe:C, 7rfe:D, 7rfe:E, 7rfe:F, 7rfe:G, 7rfe:H, 7rfg:A, 7rfg:B, 7rfg:C, 7rfg:D, 7rfg:E, 7rfg:F, 7rfg:G, 7rfg:H, 7rgd:B, 7rgd:C, 7rgd:D, 7rgd:E, 7rgd:F, 7rgd:G, 7rgd:H, 7rgm:A, 7rgm:B, 7rgm:C, 7rgm:D, 7rgm:E, 7rgm:F, 7rgm:G, 7rgm:H, 7rgq:A, 7rgq:B, 7rgq:C, 7rgq:D, 7rgq:E, 7rgq:F, 7rgq:G, 7rgq:H, 8u7q:A, 8u7q:B, 8u7q:C, 8u7q:D, 8u7q:E, 8u7q:F, 8u7q:G, 8u7q:H, 8u7v:A, 8u7v:B, 8u7v:C, 8u7v:D, 8u7v:E, 8u7v:F, 8u7v:G, 8u7v:H, 8u8o:A, 8u8o:B, 8u8o:C, 8u8o:D, 8u8o:E, 8u8o:F, 8u8o:G, 8u8o:H
22 8u7m:A 451 56 0.0712 0.0443 0.3571 3.0 8u7m:B, 8u7m:C, 8u7m:D, 8u7m:E, 8u7m:F, 8u7m:G, 8u7m:H
23 2cn3:A 728 42 0.0463 0.0179 0.3095 3.8 2cn3:B
24 2xf3:B 428 112 0.0925 0.0607 0.2321 4.5 2xf3:A, 2xfs:A, 2xfs:B, 2xh9:A, 2xh9:B
25 6wkr:C 606 41 0.0463 0.0215 0.3171 5.3 4mi0:A, 4mi5:A, 8t9g:I
26 8glo:A 255 48 0.0569 0.0627 0.3333 5.5
27 5hyn:A 581 41 0.0463 0.0224 0.3171 6.0 5hyn:F, 5hyn:K, 5hyn:Q, 5ls6:A, 5ls6:G, 5ls6:J, 5ls6:D
28 4g8s:A 182 69 0.0605 0.0934 0.2464 8.0 4g8s:B
29 4gzi:A 315 36 0.0427 0.0381 0.3333 8.1 4gzj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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