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BioLiP
>protein
TYSSRTADKFVVRLPEGMREQIAEVARSHHRSMNSEIIARLEQSLLQEGA

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3qoq:A 50 50 1.0000 1.0000 1.0000 1.98e-31 3qoq:B, 3qoq:C, 3qoq:D
2 1bdt:B 53 41 0.3000 0.2830 0.3659 0.009 1bdt:A, 1bdt:C, 1bdt:D, 1bdv:A, 1bdv:B, 1bdv:C, 1bdv:D, 1par:A, 1par:B, 1par:C, 1par:D
3 1xje:A 627 42 0.2400 0.0191 0.2857 0.50 3o0n:B, 3o0o:A, 3o0o:B, 3o0q:A, 3o0q:B, 1xje:B, 1xjf:A, 1xjf:B, 1xjg:A, 1xjg:B, 1xjj:A, 1xjj:B, 1xjk:A, 1xjk:B, 1xjm:A, 1xjn:A, 1xjn:B, 1xjn:C, 1xjn:D
4 3vyl:A 297 30 0.2200 0.0370 0.3667 0.85 3vyl:B, 3vyl:C, 3vyl:D, 3vyl:E, 3vyl:F, 3vyl:G, 3vyl:H
5 1gkp:A 458 16 0.1800 0.0197 0.5625 1.4 1gkp:B, 1gkp:C, 1gkp:D, 1gkp:E, 1gkp:F, 1gkq:A, 1gkq:B, 1gkq:C, 1gkq:D
6 4pbg:A 468 26 0.2000 0.0214 0.3846 2.2 4pbg:B
7 3s9f:A 144 22 0.2000 0.0694 0.4545 2.5
8 4c2u:A 658 31 0.2200 0.0167 0.3548 3.1 4c2t:A, 4c2t:B, 4c2t:C, 4c2t:D, 4c2u:D, 4c30:I, 4c30:D
9 5w70:A 414 20 0.1800 0.0217 0.4500 4.5 5w70:B
10 2ymz:B 130 11 0.1400 0.0538 0.6364 7.1 2ymz:D
11 2cf5:A 352 16 0.2200 0.0312 0.6875 7.2 2cf6:A
12 4iqj:A 1164 35 0.2400 0.0103 0.3429 7.7
13 4iqj:D 1185 35 0.2400 0.0101 0.3429 8.1 3e0d:A, 3e0d:B, 2hpi:A, 2hpm:A, 4iqj:B, 4iqj:C
14 7ms8:A 146 21 0.1800 0.0616 0.4286 8.1 7ms1:A, 7ms3:A, 7ms9:A, 7ms9:B, 7ms9:H, 7ms9:I, 7ms9:K
15 3vti:C 305 38 0.2400 0.0393 0.3158 8.8 3vti:D
16 1lws:A 427 26 0.1800 0.0211 0.3462 8.9 1ef0:A, 1um2:A, 1um2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218