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BioLiP
>protein
TYSPLPDDYNCNVELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHLEEGPMIEQLSK
MFFTTKHRWYPHGRYHRCRKNLNPPKDR

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7l08:a 108 108 1.0000 1.0000 1.0000 1.78e-78 8any:a, 3j7y:a, 7l20:a, 7odr:a, 7ods:a, 7odt:a, 8oir:Br, 8oit:Br, 8pk0:a, 7po4:a, 7qi4:a, 7qi5:a, 7qi6:a, 8qsj:a, 6vlz:a, 6vmi:a, 6zm5:a, 6zm6:a
2 6gaw:Bf 108 108 0.8889 0.8889 0.8889 2.12e-67 6gb2:Bf, 7nqh:Bf, 7nql:Bf, 7nsh:Bf, 7nsi:Bf, 7nsj:Bf, 8oin:Br, 8oiq:Br, 6ydp:Bf, 6ydw:Bf
3 8k2a:Lp 97 108 0.8981 1.0000 0.8981 1.10e-66 8k2b:Lp, 7og4:a, 8xt0:Lp, 8xt1:Lp, 8xt2:Lp, 8xt3:Lp, 6zs9:a, 6zsa:a, 6zsb:a, 6zsc:a, 6zsd:a, 6zse:a, 6zsg:a
4 6i9r:a 83 108 0.7685 1.0000 0.7685 3.52e-54 7a5f:a3, 7a5g:a3, 7a5h:a, 7a5i:a3, 7a5j:a, 7a5k:a3, 3j9m:a, 6nu2:a, 6nu3:a, 7o9k:a, 7o9m:a, 7of0:a, 7of2:a, 7of3:a, 7of4:a, 7of5:a, 7of6:a, 7of7:a, 7oi6:a, 7oi7:a, 7oi8:a, 7oi9:a, 7oia:a, 7oib:a, 7oic:a, 7oid:a, 7oie:a, 5ool:a, 5oom:a, 7pd3:a, 7qh6:a, 7qh7:a, 8qu5:a
5 5aj4:Bf 108 108 0.7130 0.7130 0.7130 5.64e-48
6 4bed:A 1664 35 0.0926 0.0060 0.2857 1.1 4bed:C
7 6xe6:A 826 52 0.1574 0.0206 0.3269 2.3
8 7rpk:A 953 57 0.1667 0.0189 0.3158 2.4 7rph:A, 7rpi:A, 7rpj:A
9 8ane:A 316 45 0.1204 0.0411 0.2889 2.5 8ane:B, 8ane:C, 8ane:D, 8ane:E, 8ane:F, 8ane:G
10 7e2i:D 907 59 0.1667 0.0198 0.3051 2.6 7e2g:D, 7e2h:E
11 7mop:A 2445 90 0.1944 0.0086 0.2333 3.4 6fyh:A, 6pfl:A, 6pfl:B, 8r7o:A, 8r7o:C, 8rd0:C, 8rd0:D, 8rd1:A, 8rd1:C, 8rd1:D, 8rd7:D, 6xz1:A
12 6ahr:B 774 31 0.0741 0.0103 0.2581 6.0 6ahu:B
13 8d3d:A 1314 24 0.1019 0.0084 0.4583 7.0 8d3c:A, 8d3c:B, 8d3c:C, 8d3c:D, 8d3c:E, 8d3c:F, 8d3c:G, 8d3c:H, 8d3c:I, 8d3c:J, 8d3c:K, 8d3c:L, 8d3c:M, 8d3c:N, 8d3c:O, 8d3c:P, 8d3d:B, 8d3d:C, 8d3d:D, 8d3d:E, 8d3d:F, 8d3d:G, 8d3d:H, 8d3d:I, 8d3d:J, 8d3d:K, 8d3d:L, 8d3d:M, 8d3d:N, 8d3d:O, 8d3d:P, 7f49:A, 3hxo:A, 3hxq:A, 7wn3:A, 7wn3:B, 7wn3:E, 7wn3:G, 7wn4:E, 7wn4:G, 7wn6:A, 7wn6:B, 7wn6:E, 7wn6:G, 7wpp:E, 7wpp:G, 7wpq:A, 7wpq:B, 7wpq:E, 7wpq:G, 7wpr:A, 7wpr:B, 7wpr:E, 7wpr:F, 7wpr:G, 7wpr:H, 7wpr:I, 7wpr:J, 7wpr:K, 7wpr:L, 7wpr:M, 7wpr:N, 7wpr:O, 7wpr:P, 7wpr:Q, 7wpr:R, 7wps:A, 7wps:B, 7wps:E, 7wps:G, 7wps:I, 7wps:K, 7wps:M, 7wps:O, 7wps:Q, 7wps:S, 7wps:U, 7wps:W, 7wps:Y, 7wps:a, 7wqt:A, 7wqt:B, 7wqt:E, 7wqt:F, 7wqt:G, 7wqt:H, 7wqt:I, 7wqt:J, 7wqt:K, 7wqt:L, 7wqt:M, 7wqt:N, 7wqt:O, 7wqt:P, 7wqt:Q, 7wqt:R
14 7pmv:B 1141 24 0.1019 0.0096 0.4583 7.3 7kwo:V, 6n29:A, 6n29:B, 7pmv:A, 7pmv:D, 7pmv:E, 7pnf:B, 7pnf:D, 7wn3:F, 7wn3:H, 7wn3:C, 7wn3:D, 7wn4:F, 7wn4:H, 7wn6:F, 7wn6:H, 7wn6:C, 7wn6:D, 7wpp:F, 7wpp:H, 7wpq:C, 7wpq:D, 7wpq:F, 7wpq:H, 7wpr:a, 7wpr:b, 7wpr:C, 7wpr:c, 7wpr:D, 7wpr:d, 7wpr:e, 7wpr:f, 7wpr:S, 7wpr:T, 7wpr:U, 7wpr:V, 7wpr:W, 7wpr:X, 7wpr:Y, 7wpr:Z, 7wps:Z, 7wps:b, 7wps:C, 7wps:D, 7wps:F, 7wps:H, 7wps:J, 7wps:L, 7wps:N, 7wps:P, 7wps:R, 7wps:T, 7wps:V, 7wps:X, 7wqt:a, 7wqt:b, 7wqt:C, 7wqt:c, 7wqt:D, 7wqt:d, 7wqt:e, 7wqt:f, 7wqt:S, 7wqt:T, 7wqt:U, 7wqt:V, 7wqt:W, 7wqt:X, 7wqt:Y, 7wqt:Z, 7zwh:D, 7zwh:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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