Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TYSPLPDDYNCNVELALTSDGRTIVCYHPSVDIPYEHTKPIPHLEEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNPP
KDR

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6i9r:a 83 83 1.0000 1.0000 1.0000 1.37e-59 7a5f:a3, 7a5g:a3, 7a5h:a, 7a5i:a3, 7a5j:a, 7a5k:a3, 3j9m:a, 6nu2:a, 6nu3:a, 7o9k:a, 7o9m:a, 7of0:a, 7of2:a, 7of3:a, 7of4:a, 7of5:a, 7of6:a, 7of7:a, 7oi6:a, 7oi7:a, 7oi8:a, 7oi9:a, 7oia:a, 7oib:a, 7oic:a, 7oid:a, 7oie:a, 5ool:a, 5oom:a, 7pd3:a, 7qh6:a, 7qh7:a, 8qu5:a
2 8k2a:Lp 97 97 1.0000 0.8557 0.8557 3.14e-56 8k2b:Lp, 7og4:a, 8xt0:Lp, 8xt1:Lp, 8xt2:Lp, 8xt3:Lp, 6zs9:a, 6zsa:a, 6zsb:a, 6zsc:a, 6zsd:a, 6zse:a, 6zsg:a
3 7l08:a 108 108 1.0000 0.7685 0.7685 2.71e-54 8any:a, 3j7y:a, 7l20:a, 7odr:a, 7ods:a, 7odt:a, 8oir:Br, 8oit:Br, 8pk0:a, 7po4:a, 7qi4:a, 7qi5:a, 7qi6:a, 8qsj:a, 6vlz:a, 6vmi:a, 6zm5:a, 6zm6:a
4 6gaw:Bf 108 108 0.8916 0.6852 0.6852 1.77e-46 6gb2:Bf, 7nqh:Bf, 7nql:Bf, 7nsh:Bf, 7nsi:Bf, 7nsj:Bf, 8oin:Br, 8oiq:Br, 6ydp:Bf, 6ydw:Bf
5 5aj4:Bf 108 108 0.8795 0.6759 0.6759 2.69e-45
6 6wu5:B 183 29 0.1084 0.0492 0.3103 1.4 6wu5:A, 6wu7:A, 6wu7:B, 6wud:A
7 8d3d:A 1314 24 0.1325 0.0084 0.4583 4.1 8d3c:A, 8d3c:B, 8d3c:C, 8d3c:D, 8d3c:E, 8d3c:F, 8d3c:G, 8d3c:H, 8d3c:I, 8d3c:J, 8d3c:K, 8d3c:L, 8d3c:M, 8d3c:N, 8d3c:O, 8d3c:P, 8d3d:B, 8d3d:C, 8d3d:D, 8d3d:E, 8d3d:F, 8d3d:G, 8d3d:H, 8d3d:I, 8d3d:J, 8d3d:K, 8d3d:L, 8d3d:M, 8d3d:N, 8d3d:O, 8d3d:P, 7f49:A, 3hxo:A, 3hxq:A, 7wn3:A, 7wn3:B, 7wn3:E, 7wn3:G, 7wn4:E, 7wn4:G, 7wn6:A, 7wn6:B, 7wn6:E, 7wn6:G, 7wpp:E, 7wpp:G, 7wpq:A, 7wpq:B, 7wpq:E, 7wpq:G, 7wpr:A, 7wpr:B, 7wpr:E, 7wpr:F, 7wpr:G, 7wpr:H, 7wpr:I, 7wpr:J, 7wpr:K, 7wpr:L, 7wpr:M, 7wpr:N, 7wpr:O, 7wpr:P, 7wpr:Q, 7wpr:R, 7wps:A, 7wps:B, 7wps:E, 7wps:G, 7wps:I, 7wps:K, 7wps:M, 7wps:O, 7wps:Q, 7wps:S, 7wps:U, 7wps:W, 7wps:Y, 7wps:a, 7wqt:A, 7wqt:B, 7wqt:E, 7wqt:F, 7wqt:G, 7wqt:H, 7wqt:I, 7wqt:J, 7wqt:K, 7wqt:L, 7wqt:M, 7wqt:N, 7wqt:O, 7wqt:P, 7wqt:Q, 7wqt:R
8 6hiv:BP 202 27 0.1446 0.0594 0.4444 4.3 6hix:BP
9 7pmv:B 1141 24 0.1325 0.0096 0.4583 4.6 7kwo:V, 6n29:A, 6n29:B, 7pmv:A, 7pmv:D, 7pmv:E, 7pnf:B, 7pnf:D, 7wn3:F, 7wn3:H, 7wn3:C, 7wn3:D, 7wn4:F, 7wn4:H, 7wn6:F, 7wn6:H, 7wn6:C, 7wn6:D, 7wpp:F, 7wpp:H, 7wpq:C, 7wpq:D, 7wpq:F, 7wpq:H, 7wpr:a, 7wpr:b, 7wpr:C, 7wpr:c, 7wpr:D, 7wpr:d, 7wpr:e, 7wpr:f, 7wpr:S, 7wpr:T, 7wpr:U, 7wpr:V, 7wpr:W, 7wpr:X, 7wpr:Y, 7wpr:Z, 7wps:Z, 7wps:b, 7wps:C, 7wps:D, 7wps:F, 7wps:H, 7wps:J, 7wps:L, 7wps:N, 7wps:P, 7wps:R, 7wps:T, 7wps:V, 7wps:X, 7wqt:a, 7wqt:b, 7wqt:C, 7wqt:c, 7wqt:D, 7wqt:d, 7wqt:e, 7wqt:f, 7wqt:S, 7wqt:T, 7wqt:U, 7wqt:V, 7wqt:W, 7wqt:X, 7wqt:Y, 7wqt:Z, 7zwh:D, 7zwh:E
10 7tbu:A 450 18 0.0964 0.0178 0.4444 5.9 7tbu:B
11 8hgg:C 1484 88 0.2771 0.0155 0.2614 6.4 8hgg:D, 8hgh:A, 8hgh:B
12 3j7a:F 257 71 0.2530 0.0817 0.2958 8.2 3jbn:F, 3jbo:F, 3jbp:F, 6okk:F, 8tpu:SF
13 8a7e:C 1524 84 0.2771 0.0151 0.2738 8.2 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
14 1a0r:B 339 22 0.1205 0.0295 0.4545 8.6 7e9h:B, 8jd6:B, 6rmv:A, 7tmw:B, 1xhm:A
15 8a7d:Q 273 84 0.2771 0.0842 0.2738 8.7
16 8byi:A 320 21 0.0843 0.0219 0.3333 9.1 8byi:B, 8byi:C, 8byi:D, 8byi:E
17 8te9:B 309 53 0.1928 0.0518 0.3019 9.2 8te9:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218