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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TYSAEIRRTTMGVPHIKAGNWGSAGYGFGYVQAQDNLCTMADSFLTYRGERSRHLGGSAQLVYNSTLGRPRNIDSDFFHR
HVISDEAVDRTMAAQPAKLLQMVEGFAAGYNRYVREAKAGGSAHAACRSEAWVQPITARDVWRRIYAANLAGGYSNFAEA
IANAQPP

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yf9:D 168 167 1.0000 0.9940 1.0000 4.50e-125 4yf9:A, 4yf9:G, 4yf9:J, 4yfa:A, 4yfa:D, 4yfa:G, 4yfa:J, 4yfb:D, 4yfb:A
2 5ubk:A 709 165 0.3533 0.0832 0.3576 1.11e-25 4k2f:B, 4k2g:B, 3l91:B, 4m1j:C, 3srb:A, 3srb:B, 3src:B, 4wks:C, 4wkt:C, 4wku:B, 4wkv:C, 2wyc:A, 2wyc:B
3 1gm9:A 207 117 0.1796 0.1449 0.2564 0.001 1fxh:A, 1fxv:A, 1k7d:A, 1kec:A
4 7rep:A 764 115 0.1916 0.0419 0.2783 0.002 4pel:B, 4pel:D, 4pel:F, 4pel:H, 4pem:B, 7reo:A
5 7ea4:A 762 103 0.1856 0.0407 0.3010 0.007 7ea4:B, 7eby:A, 7eby:B, 7eby:C, 7eby:D, 7eby:E, 7eby:F
6 6nvy:A 191 112 0.1737 0.1518 0.2589 0.035 6nvy:C
7 1jvz:A 152 116 0.1856 0.2039 0.2672 0.18
8 5y2v:A 304 54 0.1198 0.0658 0.3704 2.8 5y2v:B, 5y2v:C, 5y2v:D, 5y2w:A
9 6can:A 616 52 0.0778 0.0211 0.2500 2.9 6can:B, 5t88:A, 5t88:B
10 4izc:B 266 162 0.2515 0.1579 0.2593 6.2 4izc:A, 4izd:A, 4izd:B
11 8fmw:AM 122 22 0.0599 0.0820 0.4545 9.4 8fn2:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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