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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENI
MLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYID
PISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGT

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1gzf:B 211 202 1.0000 0.9573 1.0000 1.29e-150 2a9k:B, 2c8a:A, 2c8a:B, 2c8a:C, 2c8a:D, 2c8c:A, 2c8c:D, 2c8c:B, 2c8c:C, 2c8f:E, 2c8h:A, 2c8h:B, 1gzf:A, 1gzf:C, 1gzf:D, 1uzi:A, 1uzi:B
2 5bwm:B 205 207 0.3861 0.3805 0.3768 1.08e-39 4xsh:B
3 5dzq:O 184 173 0.3564 0.3913 0.4162 6.66e-39 5dzq:A
4 1ojz:A 212 206 0.3663 0.3491 0.3592 3.38e-33
5 1qs2:A 401 198 0.2871 0.1446 0.2929 5.64e-18
6 1qs2:A 401 150 0.1832 0.0923 0.2467 0.020
7 4fxq:A 445 204 0.2772 0.1258 0.2745 3.25e-15 4fk7:A, 4fxq:B
8 6x6x:A 417 201 0.2624 0.1271 0.2637 7.82e-13 2wn6:A, 2wn7:A, 6x6r:A, 6x6r:B, 6x6v:A, 6x6v:B, 6x6v:C, 6x6v:D, 6x6x:B
9 4h03:A 414 203 0.2624 0.1280 0.2611 6.11e-11 3buz:A, 1giq:A, 1giq:B, 1gir:A, 4h0t:A, 4h0v:A, 4h0x:A, 4h0y:A
10 5wtz:A 420 202 0.2525 0.1214 0.2525 2.85e-09 5h04:A, 5wu0:A
11 4uap:A 150 75 0.1188 0.1600 0.3200 1.4 4uap:B
12 4fxc:A 98 30 0.0495 0.1020 0.3333 1.6
13 5hma:A 191 37 0.0644 0.0681 0.3514 5.0 5hm9:A
14 2b3x:A 888 63 0.0842 0.0191 0.2698 9.1 2b3y:A, 2b3y:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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