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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TYPVVSFNKTSSPELKEALETLREKVILPTYLPPELRQKIFNKKYEKELAHDPVTIQIDGQPQRFSYINMLTDMPNTPKN
IRAALLSMKNGGDFANLSGLLEGMHRANRKLPYWLSAQIVRKACKAGHLQLILNMVRDVKRTGFTLERHETVNELLFWIQ
RFAWKSDYSEPETRKALREVQEILDALEGDERHMSKDRKRQQALTRFPYHRDPQFLAARLNLTAELAARRATSEQQLNSA
NDVKNLVKYAEQLVRLWPADKALLDMYTDEAYVARVDLRYLIKPQVHLRYASFTLQALKNAAKIVGQLGHGPLAAQLINR
AAAVEAESQLAYAKVDDGMAGQKIYEMVVGGKK

The query sequence (length=353) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yw5:WW 353 353 1.0000 1.0000 1.0000 0.0 6ywe:WW, 6ywx:WW, 6ywy:WW
2 7oik:A 4426 104 0.0708 0.0056 0.2404 1.4 7oim:A, 6tax:A, 6tay:A
3 6fml:G 731 79 0.0567 0.0274 0.2532 1.6 8av6:G
4 8oo7:G 704 79 0.0567 0.0284 0.2532 2.1 8oop:G
5 3qqc:A 381 76 0.0482 0.0446 0.2237 2.4
6 8ad2:A 165 69 0.0567 0.1212 0.2899 2.9 8ad2:B, 8ad2:C, 8ad2:D, 8ad2:F, 8ad2:G, 8qmg:A, 8qmg:B, 8qmg:C, 8qmg:D, 8qmg:F, 8qmg:G
7 2qfi:A 286 138 0.1048 0.1294 0.2681 4.6 3h90:A, 3h90:B, 3h90:C, 3h90:D, 2qfi:B
8 4fr4:A 350 150 0.1020 0.1029 0.2400 5.3 4fr4:B, 4fr4:C, 4fr4:D, 4fr4:E, 4fr4:F
9 4lya:A 521 59 0.0538 0.0365 0.3220 5.5 5fv0:A
10 3shq:A 299 42 0.0453 0.0535 0.3810 6.3
11 3av4:A 1140 59 0.0453 0.0140 0.2712 6.5 3av5:A, 3av6:A, 4da4:B, 5gut:A, 5guv:A, 3pt9:A, 6w8v:B, 6w8w:A, 6w8w:B, 5wy1:A
12 4g16:A 302 63 0.0567 0.0662 0.3175 8.3 2c47:A, 2c47:B, 2c47:C, 2c47:D, 2chl:A, 2cmw:A, 4g17:A, 6gro:A, 4hgl:A, 4hgs:A, 2izr:A, 2izs:A, 2izt:A, 2izu:A
13 7w3u:A 343 38 0.0312 0.0321 0.2895 9.0 7w3r:A, 7w3u:B, 7w3u:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218