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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TYNVWNFGESNGRYSALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFGK
HLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVLP
AGKVRVAVLPCKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIREHLSVGLLFSGCGINDKTLGARGGEVIM
VTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLQESVEETAEDLIGLHNRVRLRQSDSLKREIIKFDQWFDELFGNDTFH
LYDRLLAKLAYMRSGLGCDVIILDHISIVRKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGS
GALRQLSDTIIALERNQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPS

The query sequence (length=456) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n9x:B 500 470 0.9781 0.8920 0.9489 0.0 1e0j:A, 1e0j:B, 1e0j:C, 1e0j:D, 1e0j:E, 1e0j:F, 6n7i:A, 6n7i:B, 6n7i:C, 6n7i:D, 6n7i:E, 6n7n:A, 6n7n:B, 6n7n:C, 6n7n:D, 6n7n:E, 6n7n:F, 6n7s:A, 6n7s:B, 6n7s:C, 6n7s:D, 6n7s:E, 6n7t:A, 6n7t:B, 6n7t:C, 6n7t:D, 6n7t:E, 6n7t:F, 6n7v:A, 6n7v:B, 6n7v:C, 6n7v:D, 6n7v:E, 6n7v:F, 6n9u:E, 6n9v:A, 6n9v:B, 6n9v:C, 6n9v:D, 6n9v:E, 6n9v:F, 6n9w:A, 6n9w:B, 6n9w:C, 6n9w:D, 6n9w:E, 6n9x:A, 6n9x:C, 6n9x:D, 6n9x:E
2 1cr1:A 245 266 0.4934 0.9184 0.8459 2.42e-146 1cr2:A, 1cr4:A
3 1nui:A 242 191 0.4189 0.7893 1.0000 1.56e-140 1nui:B
4 8e2l:C 461 441 0.2171 0.2148 0.2245 6.49e-09 8e2l:A, 8e2l:B, 8e2l:D, 8e2l:E, 8e2l:F
5 8a3v:A 450 215 0.1140 0.1156 0.2419 2.17e-05 8a3v:B, 6t66:A, 6t66:B, 6t66:C, 6t66:D, 6t66:E, 6t66:F
6 6bbm:D 455 226 0.1206 0.1209 0.2434 5.85e-04 6bbm:F, 6bbm:B, 6bbm:C, 6bbm:E, 6qel:A, 6qel:B, 6qel:C, 6qel:D, 6qel:E, 6qel:F, 6qem:A, 6qem:B, 6qem:C, 6qem:D, 6qem:E, 6qem:F, 7t20:B, 7t20:C, 7t20:E, 7t20:F, 7t20:D, 7t21:A, 7t21:B, 7t21:C, 7t21:D, 7t21:E, 7t21:F, 7t22:A, 7t22:B, 7t22:C, 7t22:D, 7t22:E, 7t22:F, 7t23:A, 7t23:B, 7t23:C, 7t23:D, 7t23:E, 7t23:F
7 6bbm:A 405 226 0.1206 0.1358 0.2434 6.73e-04
8 4esv:C 434 357 0.1689 0.1774 0.2157 0.016 4esv:A, 4esv:B, 4esv:D, 4esv:E, 4esv:F, 4esv:G, 4esv:H, 4esv:I, 4esv:J, 4esv:K, 4esv:L, 2vye:A, 2vye:B
9 4mbu:A 165 75 0.0439 0.1212 0.2667 2.0 4mbu:B
10 6lfz:B 439 113 0.0702 0.0729 0.2832 2.5 6lfz:A
11 5w35:A 321 143 0.0877 0.1246 0.2797 2.6 5w34:A, 5w36:A
12 3fxr:A 296 90 0.0526 0.0811 0.2667 3.0 3fxu:A, 3fxu:B, 3n6u:A
13 5ubv:A 244 62 0.0373 0.0697 0.2742 3.2 5ubv:B
14 3c41:J 242 30 0.0351 0.0661 0.5333 3.7 3c41:K, 3c4j:A, 3c4j:B, 2olj:A, 2olj:B, 2olk:A, 2olk:B, 2olk:C, 2olk:D, 2q0h:A, 2q0h:B
15 3grr:A 263 127 0.0636 0.1103 0.2283 3.9 3gru:A, 3grv:A, 3gry:A
16 8p5e:3 649 46 0.0351 0.0247 0.3478 6.9 8kg6:3, 8kg8:3, 8kg9:3, 8p62:3, 8p63:3, 7pt6:3, 7pt6:C, 7pt7:3, 7qhs:3, 7v3u:3, 7v3u:C, 7v3v:3, 7v3v:C, 7w8g:3, 7w8g:C, 7z13:3, 7z13:b
17 6nak:D 165 25 0.0241 0.0667 0.4400 7.2 6n9a:E, 6nak:E, 6s84:E, 6s84:B
18 8i6r:B 222 31 0.0263 0.0541 0.3871 7.2 8i6r:D, 8i6s:B, 8i6s:D
19 5t2a:AM 148 42 0.0263 0.0811 0.2857 7.6 8a3w:SR, 8a98:SR, 6az1:R, 8ovj:SR, 8rxh:SR, 8rxx:SR
20 2zoc:A 319 93 0.0526 0.0752 0.2581 7.6 1ann:A, 1i4a:A, 2zoc:B
21 7wbt:A 899 31 0.0219 0.0111 0.3226 8.4 7wbt:B, 7wbu:A
22 2au3:A 403 100 0.0526 0.0596 0.2400 8.7
23 4g5d:A 283 94 0.0570 0.0919 0.2766 9.2 4g5d:B
24 7nhl:0 465 84 0.0417 0.0409 0.2262 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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