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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TYGIRLRVWGDYACFTRPEMKVERVSYDVMPPSAARGILEAIHWKPAIRWIVDRIHVLRPIVFDNVRRNEVSSKIPKPNP
ATAMRDRKPLYFLVDDGSNRQQRAATLLRNVDYVIEAHFELTDKAGAEDNAGKHLDIFRRRARAGQSFQQPCLGCREFPA
SFELLEGDVPLSCYAGEKRDLGYMLLDIDFERDMTPLFFKAVMEDDVITPPSRTSPEVRA

The query sequence (length=220) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8dej:A 220 220 1.0000 1.0000 1.0000 1.72e-165 8dex:A, 8dfa:A, 8dfo:A, 8dfs:A, 7kha:A
2 8g9s:N 205 216 0.4500 0.4829 0.4583 8.07e-58 8g9t:N, 8g9u:N, 8gaf:N, 8gam:N, 8gan:N
3 6d24:A 502 65 0.0818 0.0359 0.2769 2.2 5aq1:A, 5aq1:B, 5aq1:C, 6d24:B, 6d24:C, 6d24:D
4 6l3w:A 298 61 0.0909 0.0671 0.3279 4.4
5 6gos:D 396 69 0.0773 0.0429 0.2464 4.9 6grg:D
6 6s8f:F 2571 43 0.0545 0.0047 0.2791 5.7 7mq8:NR, 7mq9:NR, 7mqa:NR, 6s8f:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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