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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TYFIDVPTMSDLVHDIGVAPFIGELAAALRDDFKRWQAFDKSARVASHSEVGVIELMPVADKSRYAFKYVNGHPANTARN
LHTVMAFGVLADVDSGYPVLLSELTIATALRTAATSLMAAQALARPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYD
TDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAYATIITPDMLEPGMHLNAVGGDCPGKTELHADVLR
NARVFVEYEPQTRIEGEIQQLPADFPVVDLWRVLRGETEGRQSDSQVTVFDSVGFALEDYTVLRYVLQQAEKRGMGTKID
LVPWVEDDPKDLFSHTRGRAG

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1u7h:A 341 341 1.0000 1.0000 1.0000 0.0 1u7h:B, 1x7d:A, 1x7d:B
2 1omo:A 320 278 0.2581 0.2750 0.3165 7.69e-42 1omo:B
3 6t3e:B 325 279 0.2405 0.2523 0.2939 1.59e-31 6t3e:A
4 5gzl:A 357 283 0.2698 0.2577 0.3251 2.61e-30 5gzi:B, 5gzi:A, 5gzj:A, 5gzj:B, 5gzl:B, 5gzm:A, 5gzm:B, 5yu0:A, 5yu0:B, 5yu0:C, 5yu0:D, 5yu1:A, 5yu1:B, 5yu1:C, 5yu1:D, 5yu3:A, 5yu3:B, 5yu3:C, 5yu3:D, 5yu4:A, 5yu4:B, 5yu4:C, 5yu4:D
5 6rqa:A 322 257 0.2053 0.2174 0.2724 2.30e-19 6rqa:B
6 4m54:A 310 253 0.1789 0.1968 0.2411 1.68e-18
7 4mp6:A 334 260 0.1789 0.1826 0.2346 3.32e-17 4mp8:A, 4mpd:A
8 2i99:A 312 202 0.1672 0.1827 0.2822 3.85e-14 4bv9:A, 4bv9:B, 4bva:A, 4bva:B, 2i99:B
9 7cxu:B 327 281 0.2082 0.2171 0.2527 3.68e-09
10 8j1g:B 312 232 0.1760 0.1923 0.2586 0.21 8j1c:A, 8j1c:B, 8j1c:D, 8j1g:A, 8j1g:C, 8j1g:D
11 7eip:A 966 99 0.0733 0.0259 0.2525 1.4 7eiq:A, 7eir:A, 7eis:A, 7yke:A
12 7yyl:E 243 69 0.0704 0.0988 0.3478 2.3 7yyl:F, 7yyl:G, 7yyl:H, 7yzm:G, 7yzm:H, 7yzm:E, 7yzm:F, 7yzq:E, 7yzq:F, 7yzq:G, 7yzq:H
13 8e5t:6 514 149 0.1144 0.0759 0.2617 3.4
14 3htl:X 422 157 0.1144 0.0924 0.2484 4.1 3hr6:A, 7k7f:A
15 4rlp:A 261 65 0.0557 0.0728 0.2923 4.5 3a60:B, 3a61:A, 4rlo:A, 4rlo:B
16 4l44:A 321 65 0.0557 0.0592 0.2923 5.4 3a60:A, 3a62:A, 4l3j:A, 4l3l:A, 4l42:A, 4l43:A, 4l45:A, 4l46:A, 7n91:A, 7n91:B, 7n93:A, 7n93:B, 3we4:A, 3wf5:A, 3wf6:A, 3wf7:A, 3wf8:A, 3wf9:A
17 4i45:A 129 72 0.0645 0.1705 0.3056 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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