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BioLiP
>protein
TYEILGQMDETFILVKDSEYLYFVDQHLLEERINYEKLKDENLACRISVKAGQKLSEEKIRELIKTWRNLENPHVCPHGR
PIYYKIPLREIYEKVGRNY

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8h1e:A 102 99 1.0000 0.9706 1.0000 5.95e-70 8h1f:A, 8h1g:A, 5z41:A, 5z42:A
2 4e4w:B 213 66 0.1818 0.0845 0.2727 1.34e-04 4fmn:B, 4fmo:B
3 4e4w:B 213 57 0.2121 0.0986 0.3684 0.020 4fmn:B, 4fmo:B
4 3kdk:A 186 37 0.1616 0.0860 0.4324 1.48e-04 3kdk:B
5 3kdk:A 186 57 0.1919 0.1022 0.3333 5.10e-04 3kdk:B
6 6rmn:B 222 41 0.1818 0.0811 0.4390 0.004 6shx:B, 6sns:B, 6snv:B, 6snv:E
7 6rmn:B 222 38 0.1515 0.0676 0.3947 0.006 6shx:B, 6sns:B, 6snv:B, 6snv:E
8 8auv:F 216 51 0.1414 0.0648 0.2745 1.4 8b2l:F1, 7qix:F, 7qiz:v
9 3tvi:E 439 39 0.1111 0.0251 0.2821 2.0 3tvi:A, 3tvi:B, 3tvi:C, 3tvi:D, 3tvi:G, 3tvi:H, 3tvi:I, 3tvi:L
10 4emy:A 409 40 0.1414 0.0342 0.3500 2.8 4emy:B, 4emy:C, 4emy:D
11 1am9:C 82 52 0.1515 0.1829 0.2885 4.0 1am9:D, 1am9:A, 1am9:B
12 2x4d:A 270 54 0.1212 0.0444 0.2222 5.0
13 6r6u:A 458 39 0.1313 0.0284 0.3333 6.0 6r6u:B
14 5cmb:B 255 41 0.1616 0.0627 0.3902 6.4 5cmb:A, 5cmc:A, 5cmc:B, 4yki:A, 4yki:B, 4ykj:A, 4ykj:B, 4ykk:A, 4ykk:B, 4ykp:A, 4ykp:B
15 4dqd:A 361 34 0.1313 0.0360 0.3824 7.1 3sg0:A
16 8by5:A 198 67 0.2121 0.1061 0.3134 7.3
17 5h3z:B 1113 60 0.1717 0.0153 0.2833 9.0 5h40:A, 5h40:B, 5h41:A, 5h41:B, 5h42:A, 5h42:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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