Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TYCPARGDVILLDKRPALVVSDDLFNQVTGFAVVCPITNQIKGYPFEVPVDGTTKTTGVILADQVKSLDWKARAARTVDS
VSGETVTTVVDMVSKIIK

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7bye:F 98 98 1.0000 1.0000 1.0000 2.93e-67
2 7bye:B 108 108 0.9898 0.8981 0.8981 2.80e-63 7bye:C, 7bye:E
3 7d2m:B 112 107 0.3673 0.3214 0.3364 1.91e-19
4 5cqx:B 116 107 0.4184 0.3534 0.3832 3.69e-17 5cqx:A, 5cqy:A, 5cqy:B, 5cr2:A, 5cr2:B, 5cr2:C
5 2c06:A 110 87 0.3163 0.2818 0.3563 1.53e-09 2c06:B
6 7du5:B 118 76 0.2959 0.2458 0.3816 4.40e-04 7du5:A, 5hjz:A, 5hjz:B
7 4mdx:A 115 62 0.2041 0.1739 0.3226 0.002 4mdx:B
8 4q7f:A 510 36 0.1429 0.0275 0.3889 0.67 3qfk:A
9 7ezx:d4 297 42 0.1327 0.0438 0.3095 1.1 7ezx:dD, 6kgx:d9, 6kgx:dJ, 7y4l:d5, 7y4l:dJ, 7y5e:dD, 7y5e:dQ, 7y7a:d2, 7y7a:dc, 7y7a:dF, 7y7a:dM
10 1bxr:A 1073 58 0.1531 0.0140 0.2586 2.9 1a9x:A, 1a9x:C, 1a9x:E, 1a9x:G, 1bxr:C, 1bxr:E, 1bxr:G, 1c30:A, 1c30:C, 1c30:E, 1c30:G, 1c3o:A, 1c3o:C, 1c3o:E, 1c3o:G, 1ce8:A, 1ce8:C, 1ce8:E, 1ce8:G, 1cs0:A, 1cs0:C, 1cs0:E, 1cs0:G, 1jdb:B, 1jdb:E, 1jdb:H, 1jdb:K, 1kee:A, 1kee:C, 1kee:E, 1kee:G, 1m6v:A, 1m6v:C, 1m6v:E, 1m6v:G, 1t36:A, 1t36:C, 1t36:E, 1t36:G
11 2qpz:A 103 24 0.1020 0.0971 0.4167 3.9
12 2byo:A 183 29 0.1633 0.0874 0.5517 4.4
13 8hfr:CW 427 39 0.1224 0.0281 0.3077 4.9 8hfr:EX, 4wwu:B, 4wwu:E, 4wwu:G
14 3nok:A 234 67 0.1939 0.0812 0.2836 5.1 3nok:B
15 8sft:B 428 54 0.1633 0.0374 0.2963 6.0 8gkn:A, 8gkn:B, 8sft:A, 8sft:C, 8sft:D, 8sfu:A, 8sfu:B, 8sfw:A, 8sfy:A
16 7k3z:A 564 40 0.1122 0.0195 0.2750 6.1 7k3z:B, 7k3z:C, 7k3z:D, 7k3z:E, 7k3z:F, 7k3z:G
17 1t9b:A 583 63 0.1735 0.0292 0.2698 9.0 1t9d:B, 1t9d:C
18 6u9d:B 607 63 0.1735 0.0280 0.2698 9.7 6bd3:A, 6bd3:B, 6bd9:A, 6bd9:B, 5fem:A, 5fem:B, 5ims:A, 5ims:B, 1jsc:A, 1jsc:B, 1n0h:A, 1n0h:B, 1t9a:A, 1t9a:B, 1t9b:B, 1t9c:A, 1t9c:B, 1t9d:A, 1t9d:D, 6u9d:A, 6u9d:E, 6u9d:F, 6u9d:I, 6u9d:J, 6u9d:M, 6u9d:N, 6u9d:Q, 6u9d:U, 6u9d:V, 5wkc:A, 5wkc:D, 5wkc:B, 5wkc:E

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218