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BioLiP
>protein
TWVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQKLIKG
IDPPHVLTPEMIPPS

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1c07:A 95 95 1.0000 1.0000 1.0000 2.19e-66
2 3fia:A 98 91 0.3579 0.3469 0.3736 3.12e-17
3 1eh2:A 95 95 0.4000 0.4000 0.4000 3.07e-16 1f8h:A, 1ff1:A, 2jxc:A
4 2jq6:A 139 94 0.4105 0.2806 0.4149 9.49e-15 2kff:A, 2kfg:A, 2kfh:A, 2ksp:A
5 1fi6:A 92 92 0.3263 0.3370 0.3370 1.26e-13
6 4cid:A 497 94 0.4105 0.0785 0.4149 6.08e-13 2qpt:A
7 6yet:A 104 72 0.2421 0.2212 0.3194 4.36e-12
8 6yeu:A 107 82 0.2842 0.2523 0.3293 2.06e-09 6yig:A
9 1iq3:A 110 96 0.3158 0.2727 0.3125 2.21e-08
10 5joj:A 97 74 0.2211 0.2165 0.2838 0.006
11 5e37:A 313 63 0.1895 0.0575 0.2857 0.013 5e37:C
12 1ggz:A 144 55 0.1789 0.1181 0.3091 0.16
13 7clt:A 102 61 0.2105 0.1961 0.3279 0.18 7ygv:A, 7ygw:A
14 1rfj:A 148 55 0.1684 0.1081 0.2909 0.42 5a2h:A, 4aqr:A, 4aqr:B, 2ro9:A
15 5knn:A 450 74 0.2211 0.0467 0.2838 0.99 5knn:B, 5knn:C, 5knn:D, 5knn:E, 5knn:F, 5knn:G, 5knn:H, 5v59:A, 4xem:A, 4xeo:A, 4xeo:B
16 1tn4:A 157 55 0.1474 0.0892 0.2545 1.3 1tcf:A, 2tn4:A
17 7vus:B 68 55 0.1579 0.2206 0.2727 1.8 7vur:A, 7vur:B, 7vus:A, 7vus:C, 7vus:D, 7vut:A, 7vut:B, 7vuu:A, 7vuu:B, 7vuu:C, 7vuu:D
18 6h8q:A 879 58 0.2316 0.0250 0.3793 1.9 6h8q:B
19 5ve9:B 91 66 0.1789 0.1868 0.2576 2.0 5ve9:A
20 4pv4:A 436 31 0.1053 0.0229 0.3226 2.3 4pv4:B
21 2kn2:A 92 55 0.1474 0.1522 0.2545 2.5
22 4n5x:A 155 59 0.1789 0.1097 0.2881 3.1 4zcu:A, 4zcu:B, 4zcu:C, 4zcv:A, 4zcv:B, 4zcv:C, 4zcv:D
23 3jvt:C 156 31 0.1263 0.0769 0.3871 3.2 1b7t:Z, 1dfk:Z, 1dfl:Z, 1dfl:X, 2ec6:C, 1kk7:Z, 1kk8:C, 1kqm:C, 1kwo:C, 1l2o:C, 2os8:C, 2otg:C, 3pn7:C, 3pn7:F, 1qvi:Z, 1s5g:Z, 1scm:C, 1sr6:C, 3ts5:C, 3ts5:F, 3tuy:C, 3tuy:F, 1wdc:C
24 7dvl:B 407 53 0.1684 0.0393 0.3019 3.3 7dvl:A
25 2kz2:A 93 55 0.1474 0.1505 0.2545 3.3
26 5pal:A 109 63 0.2000 0.1743 0.3016 3.7 5zgm:A, 5zgm:B
27 6zj3:Lc 203 20 0.1263 0.0591 0.6000 3.9
28 8c41:A 720 18 0.1053 0.0139 0.5556 4.4 8c41:B
29 4i3h:A 1037 18 0.1053 0.0096 0.5556 4.4 3foe:D, 3foe:C, 3fof:C, 3fof:D, 4i3h:B, 4juo:A, 4juo:C, 3k9f:A, 3k9f:C, 3k9f:D, 3k9f:B, 4koe:A, 4koe:C, 4koe:D, 4koe:B, 4kpe:A, 4kpe:C, 4kpe:D, 4kpe:B, 4kpf:A, 4kpf:C, 4kpf:D, 4kpf:B, 3ksa:A, 3ksa:C, 3ksa:D, 3ksa:B, 3ksb:A, 3ksb:B, 3ksb:C, 3ksb:D, 3ltn:A, 3ltn:C, 3ltn:D, 3ltn:B, 3rad:A, 3rad:C, 3rad:D, 3rad:B, 3rae:A, 3rae:C, 3rae:D, 3rae:B, 3raf:A, 3raf:C, 3raf:D, 3raf:B, 4z3o:B, 4z3o:A, 4z4q:A, 4z4q:B, 4z53:A, 4z53:B
30 5i2l:A 105 61 0.1895 0.1714 0.2951 4.7 5h0p:A, 5i2o:A, 5i2q:A, 7ygy:A
31 2l1w:A 149 55 0.1474 0.0940 0.2545 5.0 2ksz:A, 2roa:A, 2rob:A
32 6l6j:A 669 15 0.1158 0.0164 0.7333 5.5
33 8aht:A 140 55 0.1474 0.1000 0.2545 6.7 8aht:B
34 5gwo:D 167 36 0.1263 0.0719 0.3333 7.4 5gwo:C, 5gwp:C, 5gwp:D, 5zcg:C, 5zcg:D, 5zch:C, 5zch:D, 5zcl:C, 5zcl:D, 5zcu:C, 5zcu:D
35 8fhj:C 532 27 0.1158 0.0207 0.4074 7.8 8fhj:A, 8fhj:B
36 8wk0:N 542 29 0.1158 0.0203 0.3793 8.0
37 2lc5:A 85 66 0.1789 0.2000 0.2576 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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