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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TVTYTNRVADARLGTFSQLLLQWKGSIYKLLYSEFLIFISLYFAISLVYRLILSESQRLMFEKLALYCNSYAELAPVSAV
LGAYVSLVVSRWWAQYESIPWPDRIMNLVSCNVDGEDEYGRLLRRTLMRYSNLCSVLILRSVSTAVYKRFPSMEHVVRAG
LMTPEEHKKFESLNSPHNKFWIPCVWFSNLAVKARNEGRIRDSVLLQGILNELNTLRSQCGRLYGYDWISIPLVYTQVVT
VAVYSFFLACLIGRQFLDPEKAYPGHELDLFVPVFTFLQFFFYAGWLKVAEQLINPFGEDDDDFETNWLIDRNLQVSLMA
VDEMHQDLPILEKDLYWNEPDPQPPYTAATAEYKRPSFLGSTFDIS

The query sequence (length=366) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4rdq:A 366 366 0.9918 0.9918 0.9918 0.0 6n23:A, 6n23:B, 6n23:C, 6n23:D, 6n23:E, 6n25:A, 6n25:B, 6n25:C, 6n25:D, 6n25:E, 6n27:A, 6n27:B, 6n27:C, 6n27:D, 6n27:E, 6n28:A, 6n28:B, 6n28:C, 6n28:D, 6n28:E, 4rdq:B, 4rdq:C, 4rdq:D, 4rdq:E, 5t5n:A, 5t5n:B, 5t5n:C, 5t5n:D, 5t5n:E
2 9ctq:D 376 366 0.7404 0.7207 0.7404 0.0 9ctq:E, 9ctq:C, 9ctq:B, 9ctq:A, 9ctr:B, 9ctr:A, 9ctr:C, 9ctr:E, 9ctr:D, 9cts:B, 9cts:E, 9cts:D, 9cts:A, 9cts:C, 9ctt:D, 9ctt:B, 9ctt:E, 9ctt:A, 9ctt:C, 8d1i:D, 8d1i:B, 8d1i:E, 8d1i:A, 8d1i:C, 8d1j:A, 8d1j:C, 8d1j:B, 8d1j:D, 8d1j:E, 8d1k:D, 8d1k:B, 8d1k:A, 8d1k:E, 8d1k:C, 8d1l:B, 8d1l:C, 8d1l:A, 8d1l:D, 8d1l:E, 8d1o:E, 8d1o:A, 8d1o:B, 8d1o:C, 8d1o:D
3 8d1e:D 376 367 0.6721 0.6543 0.6703 0.0 8d1e:E, 8d1e:C, 8d1e:A, 8d1e:B, 8d1f:C, 8d1f:E, 8d1f:A, 8d1f:D, 8d1f:B, 8d1g:A, 8d1g:B, 8d1g:E, 8d1g:C, 8d1g:D, 8d1h:E, 8d1h:B, 8d1h:A, 8d1h:C, 8d1h:D, 8d1n:E, 8d1n:D, 8d1n:A, 8d1n:C, 8d1n:B, 8ecy:E, 8ecy:C, 8ecy:G, 8ecy:K, 8ecy:N, 6vx6:E, 6vx6:A, 6vx6:B, 6vx6:C, 6vx6:D, 6vx7:C, 6vx7:A, 6vx7:B, 6vx7:E, 6vx7:D
4 6ly5:L 196 44 0.0437 0.0816 0.3636 1.4 6l4t:11, 6l4u:11
5 8c45:A 1218 70 0.0519 0.0156 0.2714 4.0 8c45:B, 8q56:A
6 7w54:B 518 25 0.0301 0.0212 0.4400 8.4 7w54:A
7 8jqe:A 296 55 0.0437 0.0541 0.2909 8.5 8jqe:B
8 5eud:A 454 96 0.0683 0.0551 0.2604 9.9 5eud:B, 5eue:A, 5eue:B, 3mad:A, 3mad:B, 3mau:A, 3mau:B, 3mau:C, 3mau:D, 3mbb:A, 3mbb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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