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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFR
SAEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGA
DIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVL
TILHQ

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4guh:B 265 249 1.0000 0.9245 0.9839 1.55e-178 4gug:A, 4gug:B, 4guh:A, 4gui:A, 4gui:B, 4guj:A, 4guj:B, 4iuo:A, 4iuo:B, 3m7w:A, 3m7w:B, 3m7w:C, 3m7w:D, 3m7w:E, 3m7w:F, 3nnt:A, 3nnt:B
2 8b2b:AAA 252 249 0.7633 0.7421 0.7510 1.13e-137 8b2b:BBB, 8b2c:AAA, 4clm:B, 4cno:A, 4cno:B, 4cno:C, 4cno:D, 4cnp:A, 4cnp:B, 6h5c:A, 6h5c:B, 6h5d:A, 6h5d:B, 6h5g:A, 6h5j:A, 1l9w:A, 1l9w:B, 1l9w:C, 1l9w:D, 1qfe:A, 1qfe:B, 6sfe:A, 6sfe:B, 6sfg:A, 4uio:A
3 4h3d:B 254 248 0.5633 0.5433 0.5565 1.54e-96 4h3d:A, 4h3d:C, 4h3d:D, 3js3:A, 3js3:B, 3js3:C, 3js3:D
4 8b2a:BBB 238 219 0.3020 0.3109 0.3379 2.55e-32 8b2a:AAA, 1sfj:A, 1sfj:B, 6sfh:A, 6sfh:B
5 2o7q:A 501 232 0.2898 0.1417 0.3060 5.13e-18 6bmb:A, 6bmq:A, 2gpt:A, 2o7s:A
6 6hqv:A 1555 185 0.1755 0.0277 0.2324 4.99e-05 6hqv:B
7 8dek:B 441 83 0.0980 0.0544 0.2892 1.0 8dek:A, 8df2:A, 8df2:B, 8df2:C, 8df2:D
8 8emt:B 1221 49 0.0653 0.0131 0.3265 2.4
9 3t4k:A 268 53 0.0653 0.0597 0.3019 3.4 3t4j:A, 3t4j:B, 3t4k:B, 3t4l:A, 3t4l:B, 3t4o:A, 3t4o:B, 3t4q:A, 3t4q:B, 3t4s:A, 3t4s:B, 3t4t:A, 3t4t:B
10 2vsi:B 227 99 0.1061 0.1145 0.2626 3.8 2vsi:A
11 1xtp:A 246 50 0.0694 0.0691 0.3400 7.9
12 6tg9:G 148 46 0.0531 0.0878 0.2826 8.0 6tg9:C, 6tga:G, 6tga:C
13 5dqr:C 421 97 0.1102 0.0641 0.2784 8.7 5dqr:A, 5dqr:B, 5dqr:D, 5dqr:E, 5dqr:F
14 4luj:A 214 142 0.1551 0.1776 0.2676 9.1 4luj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218