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BioLiP
>protein
TVRKNQATLTADEKRRFVAAVLELKRSGRYDEFVRTHNEFIMSDTDSGERTGHRSPSFLPWHRRFLLDFEQALQSVDSSV
TLPYWDWSADRTVRASLWAPDFLGGTGRSTDGRVMDGPFAASTGNWPINVRVDSRTYLRRSLGGSVAELPTRAEVESVLA
ISAYDLPPYNSASEGFRNHLEGWRGVNLHNRVHVWVGGQMATGVSPNDPVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGT
PDVVDLNETMKPWNTVRPADLLDHTAYYTFDALEHHHH

The query sequence (length=278) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5z0f:A 279 278 1.0000 0.9964 1.0000 0.0 2ahk:A, 2ahl:A, 3aws:A, 3awt:A, 3awu:A, 3awv:A, 3aww:A, 3awx:A, 3awy:A, 3awz:A, 3ax0:A, 7cit:A, 7ciy:A, 1wx2:A, 1wx4:A, 5z0d:A, 5z0e:A, 5z0g:A, 5z0h:A, 5z0i:A, 5z0j:A, 5z0k:A, 5z0l:A, 5z0m:A, 2zmx:A, 2zmy:A, 2zmz:A, 2zwd:A, 2zwe:A, 2zwf:A, 2zwg:A
2 6j2u:B 273 273 0.8417 0.8571 0.8571 1.89e-178
3 8hpi:A 289 284 0.4424 0.4256 0.4331 1.82e-64 4d87:A, 4d87:B, 6ei4:A, 6ei4:B, 4hd4:A, 4hd4:B, 4hd6:A, 4hd6:B, 4hd7:A, 4hd7:B, 8hpi:B, 5i38:A, 5i38:B, 5i3a:A, 5i3a:B, 5i3b:A, 5i3b:B, 4j6t:A, 4j6t:B, 4j6v:A, 4j6v:B, 3nm8:A, 3nm8:B, 3npy:A, 3npy:B, 3nq0:A, 3nq0:B, 3nq1:A, 3nq1:B, 3nq5:A, 3nq5:B, 3ntm:A, 3ntm:B, 5oae:A, 5oae:B, 4p6r:A, 4p6r:B, 4p6s:A, 4p6s:B, 4p6t:A, 4p6t:B, 6qxd:A, 6qxd:B
4 9ey8:DA 450 300 0.2878 0.1778 0.2667 7.70e-20 9ey5:A, 9ey6:A, 9ey7:A, 9ey8:AA, 9ey8:BA, 9ey8:CA, 5m8l:A, 5m8l:C, 5m8l:B, 5m8l:D, 5m8m:A, 5m8m:B, 5m8m:C, 5m8m:D, 5m8n:A, 5m8n:C, 5m8n:D, 5m8n:B, 5m8o:B, 5m8o:C, 5m8o:A, 5m8o:D, 5m8p:A, 5m8p:B, 5m8p:C, 5m8p:D, 5m8q:A, 5m8q:C, 5m8q:D, 5m8q:B, 5m8r:A, 5m8r:B, 5m8r:C, 5m8r:D, 5m8s:A, 5m8s:B, 5m8s:D, 5m8s:C, 5m8t:A, 5m8t:B, 5m8t:C, 5m8t:D
5 6z1s:A 381 279 0.2842 0.2073 0.2832 9.29e-16
6 4bed:B 1734 219 0.2014 0.0323 0.2557 1.78e-14 4bed:D, 3qjo:A, 3qjo:B
7 4bed:B 1734 207 0.2086 0.0334 0.2802 6.10e-14 4bed:D, 3qjo:A, 3qjo:B
8 4bed:B 1734 237 0.2158 0.0346 0.2532 2.13e-11 4bed:D, 3qjo:A, 3qjo:B
9 4bed:B 1734 303 0.2590 0.0415 0.2376 4.54e-09 4bed:D, 3qjo:A, 3qjo:B
10 4yd9:A 1656 237 0.2410 0.0405 0.2827 8.55e-14 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
11 4yd9:A 1656 244 0.2374 0.0399 0.2705 6.73e-12 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
12 4yd9:A 1656 306 0.2662 0.0447 0.2418 1.03e-10 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
13 4yd9:A 1656 300 0.2554 0.0429 0.2367 1.29e-10 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
14 4yd9:B 825 306 0.2698 0.0909 0.2451 8.83e-14 4yd9:E, 4yd9:H, 4yd9:K, 4yd9:N, 4yd9:Q, 4yd9:T, 4yd9:W, 4yd9:Z, 4yd9:c
15 4yd9:B 825 289 0.2302 0.0776 0.2215 2.24e-11 4yd9:E, 4yd9:H, 4yd9:K, 4yd9:N, 4yd9:Q, 4yd9:T, 4yd9:W, 4yd9:Z, 4yd9:c
16 4bed:A 1664 307 0.3058 0.0511 0.2769 5.64e-13 4bed:C
17 4bed:A 1664 187 0.1871 0.0312 0.2781 1.47e-10 4bed:C
18 4bed:A 1664 89 0.1043 0.0174 0.3258 2.53e-08 4bed:C
19 4bed:A 1664 265 0.2086 0.0349 0.2189 4.07e-07 4bed:C
20 4bed:A 1664 44 0.0719 0.0120 0.4545 3.07e-04 4bed:C
21 4j3r:A 372 282 0.2446 0.1828 0.2411 1.45e-12 6gsg:A, 4j3p:A, 4j3q:A, 4j3q:B, 5or3:A, 5or3:B, 5or3:C, 5or3:D, 5or4:A, 5or4:B, 5or4:C, 5or4:D
22 8tnv:A 393 303 0.2842 0.2010 0.2607 5.25e-12 8tnv:B
23 1lnl:A 408 295 0.2734 0.1863 0.2576 2.43e-09 1lnl:B, 1lnl:C
24 1js8:A 382 264 0.2302 0.1675 0.2424 1.26e-07 1js8:B
25 8bbq:A 324 41 0.0719 0.0617 0.4878 1.85e-06 8bbq:B, 8bbr:A, 8bbr:B
26 8bbq:A 324 43 0.0540 0.0463 0.3488 1.3 8bbq:B, 8bbr:A, 8bbr:B
27 5zre:B 474 247 0.1978 0.1160 0.2227 3.50e-06 5zre:A, 5zre:C
28 6hqi:A 444 203 0.1799 0.1126 0.2463 3.78e-06
29 4yd9:L 366 72 0.0791 0.0601 0.3056 1.01e-05 4yd9:C, 4yd9:a, 4yd9:F, 4yd9:R, 4yd9:I, 4yd9:O, 4yd9:U, 4yd9:X, 4yd9:d
30 5zrd:A 534 72 0.0791 0.0412 0.3056 1.77e-05 5zrd:B, 5zrd:C, 5zrd:D
31 5zrd:A 534 76 0.0755 0.0393 0.2763 0.27 5zrd:B, 5zrd:C, 5zrd:D
32 1bug:A 336 239 0.2050 0.1696 0.2385 2.44e-05 1bug:B
33 5m6b:C 514 202 0.1799 0.0973 0.2475 2.93e-05
34 5ce9:A 339 186 0.1439 0.1180 0.2151 5.20e-05 5ce9:B
35 6jua:A 533 69 0.0863 0.0450 0.3478 7.34e-05 6jub:A, 6jud:A
36 6ju4:B 560 69 0.0863 0.0429 0.3478 8.16e-05 6ju4:A, 6ju5:A, 6ju5:B, 6jua:B, 6jub:B, 6juc:A, 6juc:B, 6jud:B, 3w6w:B
37 3w6w:A 583 57 0.0791 0.0377 0.3860 1.05e-04 6ju7:A, 6ju7:B, 6ju8:A, 6ju8:B, 6ju9:A, 6ju9:B
38 4z11:A 513 198 0.1835 0.0994 0.2576 3.95e-04 4z0y:A, 4z0y:B, 4z0y:D, 4z0y:C, 4z0z:A, 4z0z:B, 4z0z:C, 4z0z:D, 4z10:A, 4z10:C, 4z10:B, 4z10:D, 4z10:E, 4z10:F, 4z11:B, 4z11:C, 4z11:D, 4z12:A, 4z12:B, 4z13:A, 4z13:B, 4z14:D, 4z14:B, 4z14:H, 4z14:F, 4z14:C, 4z14:E, 4z14:G, 4z14:A
39 4oua:B 557 80 0.0899 0.0449 0.3125 0.001 5m6b:B, 5m6b:A, 5m6b:D, 4oua:A
40 6els:A 459 198 0.1691 0.1024 0.2374 0.003 6elt:A, 6elv:A
41 2y9w:A 391 64 0.0899 0.0639 0.3906 0.012 2y9w:B, 2y9x:A, 2y9x:B, 2y9x:C, 2y9x:D
42 3vpb:B 282 60 0.0683 0.0674 0.3167 0.79 3vpb:A, 3vpb:C, 3vpb:D, 3vpc:A, 3vpc:B, 3vpc:C, 3vpc:D
43 3duf:D 324 46 0.0468 0.0401 0.2826 3.8 3duf:B, 3duf:H, 3duf:F, 3dv0:D, 3dv0:B, 3dv0:H, 3dv0:F, 3dva:D, 3dva:B, 3dva:H, 3dva:F, 1w85:D, 1w85:B, 1w85:H, 1w85:F, 1w88:D, 1w88:B, 1w88:H
44 1oxy:A 573 106 0.0899 0.0436 0.2358 6.5
45 5olt:A 383 68 0.0719 0.0522 0.2941 6.5 5ojh:A
46 1nol:A 607 106 0.0899 0.0412 0.2358 6.8 1ll1:A, 1lla:A
47 7nvn:Z 529 34 0.0504 0.0265 0.4118 7.0 8i1u:F, 8i1u:N, 8i9u:F, 8i9u:N, 7nvl:Z, 7nvl:z, 7nvm:Z, 7nvm:z, 7nvn:z, 8sfe:z, 8sfe:Z, 8sff:Z, 8sff:z, 8sg8:Z, 8sg8:z, 8sg9:Z, 8sg9:z, 8sgc:Z, 8sgc:z, 8sgl:Z, 8sgl:z, 8sgq:z, 8sgq:Z, 8sh9:Z, 8sh9:z, 8sha:Z, 8sha:z, 8shd:Z, 8shd:z, 8she:Z, 8she:z, 8shf:Z, 8shf:z, 8shg:Z, 8shg:z, 8shl:Z, 8shl:z, 8shn:Z, 8shn:z, 8sho:Z, 8sho:z, 8shp:Z, 8shp:z, 8shq:Z, 8shq:z, 8sht:Z, 8sht:z, 7trg:I, 7ttn:I, 7ttt:I, 7tub:I, 7wu7:F, 7wu7:N, 7wz3:Z, 7wz3:z, 7x0s:K, 7x0s:z, 7x0v:K, 7x0v:z, 7x3j:Z, 7x3j:z, 7x3u:Z, 7x3u:z
48 1e3p:A 645 70 0.0612 0.0264 0.2429 7.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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