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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFYP
ENAEEELVQEITQHLFFLQVKKQILDEKVYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPE
MWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIR
NISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRK

The query sequence (length=290) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6cds:A 325 290 0.9897 0.8831 0.9897 0.0 6cds:B, 7lwh:A, 4p7i:A, 4p7i:B, 3wa0:A, 3wa0:B, 3wa0:C, 3wa0:E, 3wa0:F, 4zri:A, 4zri:B, 4zrk:A, 4zrk:C, 4zrk:B, 4zrk:D
2 2ems:A 316 291 0.6345 0.5823 0.6323 8.25e-138 2d10:A, 2d10:B, 2d10:C, 2d10:D, 2d11:A, 2d11:B, 2d11:C, 2d11:D, 2emt:A, 2emt:B, 1gc6:A, 1j19:A, 3x23:A, 2yvc:A, 2yvc:B, 2yvc:C, 2zpy:A
3 8cir:B 345 291 0.6241 0.5246 0.6220 3.46e-136 8cir:A, 8cis:A, 6txs:AAA
4 5rym:A 284 291 0.3000 0.3063 0.2990 4.25e-34 3bin:A, 5ryn:A, 5ryo:A, 5ryp:A, 5ryq:A, 5ryr:A, 5rys:A, 5ryt:A, 5ryu:A, 5ryv:A, 5ryw:A, 5ryx:A, 5ryy:A, 5ryz:A, 5rz0:A, 5rz1:A, 5rz2:A, 5rz3:A, 5rz4:A, 5rz5:A, 5rz6:A, 5rz7:A, 5rz8:A, 5rz9:A, 5rza:A, 5rzb:A, 5rzc:A, 5rzd:A, 5rze:A, 5rzf:A, 5rzg:A, 5rzh:A, 5rzi:A, 5rzj:A, 5rzk:A, 5rzl:A, 5rzm:A, 5rzn:A, 5rzo:A, 5rzp:A, 5rzq:A, 5rzr:A, 5rzs:A, 5rzt:A, 5rzu:A, 5rzv:A, 5rzw:A, 5rzx:A, 5rzy:A, 5rzz:A, 5s00:A
5 6mfs:A 370 187 0.1448 0.1135 0.2246 2.75e-09 2g35:A, 2k00:A, 1mk7:B, 1mk7:D, 1mk9:B, 1mk9:D, 1mk9:F, 1mk9:H, 2mwn:B, 1y19:B, 1y19:D, 1y19:F, 1y19:H, 1y19:J, 1y19:L
6 4hdq:A 311 244 0.1897 0.1768 0.2254 2.87e-07 6oq3:A, 6oq4:A, 8su8:A, 8t09:A, 8t7v:A, 3u7d:A, 3u7d:C, 6uzk:A
7 3pih:A 836 95 0.0931 0.0323 0.2842 3.7
8 1jkf:A 466 36 0.0552 0.0343 0.4444 4.5 1jkf:B
9 1p1i:B 498 36 0.0552 0.0321 0.4444 4.9 1p1h:B, 1p1h:D
10 1jki:A 525 36 0.0552 0.0305 0.4444 5.2 1jki:B, 1la2:A, 1la2:B, 1la2:C, 1la2:D, 1p1h:A, 1p1h:C, 1p1i:A, 1p1j:A, 1p1j:B, 1p1k:A, 1p1k:B, 1rm0:A, 1rm0:B
11 4jix:A 112 45 0.0586 0.1518 0.3778 5.2 4jix:B
12 8etf:C 330 35 0.0483 0.0424 0.4000 6.1 8esg:A, 8esg:H, 8etf:H, 8etf:A, 8etf:B, 8etf:D, 8etf:E, 8etf:F, 8etf:G, 8fao:H, 8fao:A, 8fao:B, 8fao:C, 8fao:D, 8fao:E, 8fao:F, 8fao:G
13 1kdq:A 130 29 0.0414 0.0923 0.4138 8.1 2jet:B
14 7pkt:t 192 64 0.0586 0.0885 0.2656 8.6
15 7svj:B 326 74 0.0690 0.0613 0.2703 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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