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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TVPDRDNDGIPDSLEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEARH
PLVAAYPIVHVDMENIILSKNTRTISKNTSTSRTHTSSNSNSSTVAIDHSLSTWAETMGLNTADTARLNANIRYVNTGTA
PIYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDT
DQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPSKPLETTKPDMTLKEALKIAFG
FNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVV
KEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNP
NYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG

The query sequence (length=523) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4h2a:A 704 541 0.9962 0.7401 0.9630 0.0 4ee2:A, 5fr3:A, 3hvd:B, 3kwv:A, 3kwv:B, 3kwv:D, 3kwv:E, 3mhz:A, 4nam:A, 3q8a:A, 3q8e:A, 3tew:A, 3tex:A, 3tey:A, 3tez:A, 1tzn:A, 1tzn:B, 1tzn:C, 1tzn:D, 1tzn:E, 1tzn:F, 1tzn:G, 1tzn:H, 1tzn:I, 1tzn:J, 1tzn:K, 1tzn:L, 1tzn:M, 1tzn:O, 1tzo:A, 1tzo:B, 1tzo:C, 1tzo:D, 1tzo:E, 1tzo:F, 1tzo:G, 1tzo:H, 1tzo:I, 1tzo:J, 1tzo:K, 1tzo:L, 1tzo:M, 1tzo:O, 6vra:A, 6vra:B, 6vra:C, 6vra:D, 6vra:E, 6vra:F, 6vra:G, 6vra:H, 6wjj:A, 6wjj:B, 6wjj:C, 6wjj:F, 6wjj:D, 6wjj:G, 6wjj:E, 6wjj:H
2 1t6b:X 676 534 0.9924 0.7678 0.9719 0.0 1acc:A, 3hvd:A, 3hvd:C, 3hvd:D, 3hvd:E, 3hvd:F, 3hvd:G, 3hvd:H, 3q8b:A, 3q8c:A
3 7kxr:A 562 562 0.9981 0.9288 0.9288 0.0 3j9c:A, 7kxr:B, 7kxr:C, 7kxr:D, 7kxr:E, 7kxr:F, 7kxr:G, 6psn:A, 6psn:B, 6psn:C, 6psn:D, 6psn:E, 6psn:F, 6psn:G, 6uzb:A, 6uzb:B, 6uzb:C, 6uzb:D, 6uzb:E, 6uzb:F, 6uzb:G, 6uzd:A, 6uzd:B, 6uzd:C, 6uzd:D, 6uzd:E, 6uzd:F, 6uzd:G, 6uze:A, 6uze:B, 6uze:C, 6uze:D, 6uze:E, 6uze:F, 6uze:G
4 3q8f:A 645 526 0.9713 0.7876 0.9658 0.0
5 7o85:A 332 402 0.5755 0.9066 0.7488 0.0 7o85:D, 7o85:G, 7o85:J, 7o85:M, 7o85:P, 7o85:S
6 6klo:A 368 380 0.3059 0.4348 0.4211 3.27e-79 6klo:B, 6klo:C, 6klo:D, 6klo:E, 6klo:F, 6klo:G, 6klx:A, 6klx:B, 6klx:C, 6klx:D, 6klx:E, 6klx:F, 6klx:G
7 7vnn:D 641 387 0.3059 0.2496 0.4134 1.25e-78 8ekm:A, 8ekm:B, 8ekm:C, 8ekm:D, 8ekm:E, 8ekm:F, 8ekm:G, 7vnj:A, 7vnj:B, 7vnj:C, 7vnj:D, 7vnj:E, 7vnj:F, 7vnj:G, 7vnn:A, 7vnn:B, 7vnn:C, 7vnn:E, 7vnn:F, 7vnn:G, 7yvq:A, 7yvq:B, 7yvq:C, 7yvq:D, 7yvq:E, 7yvq:F, 7yvq:G, 7yvs:A, 7yvs:B, 7yvs:C, 7yvs:D, 7yvs:E, 7yvs:F, 7yvs:G
8 6klw:A 406 409 0.3098 0.3990 0.3961 2.99e-78 6klw:B, 6klw:C, 6klw:D, 6klw:E, 6klw:F, 6klw:G
9 8ekk:A 533 379 0.3040 0.2983 0.4195 1.01e-76 8ekk:B, 8ekk:C, 8ekk:D, 8ekk:E, 8ekk:F, 8ekk:G, 8ekl:A, 8ekl:B, 8ekl:C, 8ekl:D, 8ekl:E, 8ekl:F, 8ekl:G
10 6uwr:A 660 409 0.3098 0.2455 0.3961 2.35e-75 6uwi:A, 6uwi:h, 6uwi:G, 6uwi:n, 6uwi:F, 6uwi:m, 6uwi:E, 6uwi:l, 6uwi:D, 6uwi:k, 6uwi:C, 6uwi:j, 6uwi:B, 6uwi:i, 6uwi:H, 6uwi:a, 6uwi:I, 6uwi:b, 6uwi:J, 6uwi:c, 6uwi:K, 6uwi:d, 6uwi:L, 6uwi:e, 6uwi:M, 6uwi:f, 6uwi:N, 6uwi:g, 6uwr:B, 6uwr:C, 6uwr:D, 6uwr:E, 6uwr:F, 6uwr:G, 6uwr:H, 6uwr:I, 6uwr:J, 6uwr:K, 6uwr:L, 6uwr:M, 6uwr:N, 6uwt:H, 6uwt:I, 6uwt:J, 6uwt:K, 6uwt:L, 6uwt:M, 6uwt:N, 6uwt:A, 6uwt:B, 6uwt:C, 6uwt:D, 6uwt:E, 6uwt:F, 6uwt:G
11 8dcm:C 695 409 0.3098 0.2331 0.3961 2.81e-75
12 6v1s:E 276 317 0.2505 0.4746 0.4132 7.07e-65 6v1s:A, 6v1s:B, 6v1s:C, 6v1s:D, 6v1s:F, 6v1s:G
13 6sms:A 724 410 0.2792 0.2017 0.3561 1.77e-54
14 7mjr:A 899 424 0.2734 0.1591 0.3373 1.47e-52
15 2ogi:B 194 86 0.0459 0.1237 0.2791 2.4 2ogi:A
16 7t09:B 497 91 0.0478 0.0503 0.2747 7.9 3q73:B, 3q75:B, 3q78:B, 3q79:B, 3q7a:B, 3q7f:B, 3sfx:B, 3sfy:B, 7t08:B, 7t0a:B, 7t0b:B, 7t0c:B, 7t0d:B, 7t0e:B, 8t70:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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