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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TVPDALKDRIALKKTARQLNIVYFLGSDTEPVPDYERRLSELLLYLQQFYGKEMQRHGYGARSFGLDIKSPGRVNIIEYK
AKNPAAHYPYENGGGWKAAQELDEFFKAHPDRKKSQHTLIIMPTWNDEKNGPDNPGGVPFYGMGRNCFALDYPAFDIKHL
GQKTREGRLLTKWYGGMAHELGHGLNLPHNHQTASDGKKYGTALMGSGNYTFGTSPTFLTPASCALLDACEVFSVTPSQQ
FYEGKPEVEVGDVAISFKGDQILVSGNYKSPQTVKALNVYIQDPPYAVNQDYDAVSFSRRLGKKSGKFSMKIDKKELEGL
NNNEFRISLMFILANGLHMQKHFTFHWDALQDYR

The query sequence (length=354) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6z2p:A 356 354 0.9944 0.9888 0.9944 0.0 6z2d:A, 6z2o:A, 6z2q:A
2 8dek:B 441 236 0.1836 0.1474 0.2754 6.67e-15 8dek:A, 8df2:A, 8df2:B, 8df2:C, 8df2:D
3 6x5x:A 200 52 0.0593 0.1050 0.4038 0.32
4 6o38:A 573 51 0.0508 0.0314 0.3529 0.45 6o38:B, 6o38:C, 6o38:D, 6o38:E, 6o38:F
5 7bkb:G 568 68 0.0650 0.0405 0.3382 1.4 7bkb:g, 7bkc:G, 7bkc:g
6 2z71:C 331 29 0.0339 0.0363 0.4138 3.8 2z71:A
7 1nd1:A 202 31 0.0395 0.0693 0.4516 4.0 2w12:A, 2w13:A, 2w14:A, 2w15:A
8 4yu6:A 754 59 0.0565 0.0265 0.3390 4.8 4yu5:A, 4yu5:B, 4yu6:B
9 2ero:A 426 24 0.0282 0.0235 0.4167 4.9 2ero:B, 2erp:A, 2erp:B, 2erq:A, 2erq:B
10 6sw9:Z 197 65 0.0621 0.1117 0.3385 5.8 5jb3:Z, 5jbh:Z, 6skf:Ac, 6skg:Ac, 6swc:Z, 6swe:Z, 6th6:Ac, 4v4n:BC, 4v6u:AC, 7zag:Z, 7zah:Z, 7zai:Z, 7zhg:Z
11 7cc7:A 227 63 0.0480 0.0749 0.2698 6.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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