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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TVFYTSIDIGSRYIKGLVLGKWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFER
EDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVY
EMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLD
TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIPGGVVLTGGG
AKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFA

The query sequence (length=372) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4a2b:A 386 384 1.0000 0.9637 0.9688 0.0 4a2a:A, 4a2a:B, 1e4g:T
2 3wt0:D 378 355 0.2204 0.2169 0.2310 2.09e-17 3wqt:A, 3wqt:C, 3wqt:D, 3wqu:A, 3wqu:B, 3wqu:C, 3wqu:D, 3wt0:A, 3wt0:B, 3wt0:C
3 7q6g:A 388 389 0.2204 0.2113 0.2108 1.24e-16 7q6d:A
4 7q6i:B 383 354 0.2097 0.2037 0.2203 1.49e-15 7q6f:A, 7q6f:B, 7q6i:A, 7q6i:C, 7q6i:E, 7q6i:F, 7q6i:G, 7q6i:H, 7q6i:I, 7q6i:J, 7q6i:K, 7q6i:L, 7q6i:M, 7q6i:N, 7q6i:O, 7q6i:P
5 3wqt:B 334 345 0.2124 0.2365 0.2290 2.64e-15
6 7q6i:D 362 353 0.2043 0.2099 0.2153 7.57e-13
7 1n2z:A 245 34 0.0376 0.0571 0.4118 0.98 5m29:A, 5m29:B, 5m2q:A, 5m2q:B, 5m34:A, 5m34:B, 5m3b:A, 5m3b:B, 1n2z:B, 1n4a:A, 1n4a:B
8 4zm1:C 232 126 0.0941 0.1509 0.2778 1.0
9 3jc9:Ma 355 175 0.1156 0.1211 0.2457 1.4 3jc9:Mb, 3jc9:Mc, 3jc9:Md, 3jc9:Me, 3jc9:Mf, 3jc9:Mg, 3jc9:Mh, 3jc9:Mi, 3jc9:Mj, 3jc9:Mk, 3jc9:Ml
10 8fkt:SY 378 90 0.0645 0.0635 0.2667 2.9 8fku:SY, 8fkv:SY, 8fkw:SY, 8fkx:SY, 8fky:SY
11 4gt2:A 371 49 0.0430 0.0431 0.3265 3.6 4gt2:B, 4gt2:E, 4gt2:G, 6gzw:A, 6gzw:B, 5map:A, 5map:B, 5mjh:A, 5mjh:B
12 7kh2:D 415 64 0.0591 0.0530 0.3438 5.6 7kh2:A, 7kh2:B, 7kh2:C
13 7anv:A 467 44 0.0349 0.0278 0.2955 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218