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BioLiP
>protein
TVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4rbo:A 55 54 1.0000 0.9818 1.0000 1.87e-33 4rbo:D
2 8pna:A 67 53 0.5370 0.4328 0.5472 2.15e-12 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
3 4rdu:D 62 53 0.4815 0.4194 0.4906 1.27e-11 4rdu:A, 4xrs:I, 4xrs:G
4 1ig7:A 58 53 0.4444 0.4138 0.4528 1.90e-11
5 8eml:A 58 53 0.5000 0.4655 0.5094 1.59e-10 8eml:B
6 3rkq:A 58 52 0.4444 0.4138 0.4615 1.74e-10 3rkq:B
7 5flv:M 229 53 0.4630 0.1092 0.4717 2.59e-10 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
8 2me6:A 71 53 0.4815 0.3662 0.4906 4.14e-10
9 1nk2:P 77 52 0.4074 0.2857 0.4231 4.80e-10 1nk3:P
10 3a01:A 78 53 0.4259 0.2949 0.4340 1.88e-09 3a01:E
11 1jgg:A 57 53 0.4259 0.4035 0.4340 1.24e-08 1jgg:B
12 1b72:A 68 53 0.4444 0.3529 0.4528 3.39e-08
13 2h1k:B 60 53 0.4074 0.3667 0.4151 4.45e-08 2h1k:A
14 1zq3:P 68 52 0.3704 0.2941 0.3846 8.59e-08
15 6es3:K 72 53 0.3519 0.2639 0.3585 1.04e-07 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
16 6m3d:C 108 53 0.4074 0.2037 0.4151 2.59e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
17 6m3d:C 108 52 0.3704 0.1852 0.3846 7.28e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
18 1fjl:A 65 50 0.3333 0.2769 0.3600 1.79e-06 1fjl:B, 1fjl:C
19 2r5z:A 75 53 0.3519 0.2533 0.3585 2.09e-06 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
20 4uus:A 67 52 0.3333 0.2687 0.3462 5.10e-06 4uus:E
21 2lkx:A 68 50 0.3519 0.2794 0.3800 5.21e-06
22 1ahd:P 68 49 0.3148 0.2500 0.3469 5.94e-06
23 1puf:A 77 51 0.3704 0.2597 0.3922 6.46e-06 2lp0:A
24 5zjr:A 64 51 0.4074 0.3438 0.4314 1.08e-05 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
25 4cyc:A 66 52 0.3333 0.2727 0.3462 1.31e-05 1b8i:A
26 4qtr:C 57 53 0.3889 0.3684 0.3962 2.55e-05 4qtr:A, 4qtr:B, 4qtr:D
27 8ejo:A 56 50 0.2593 0.2500 0.2800 3.82e-05 8ejo:B, 8ejp:A, 8ejp:B
28 2ld5:A 67 51 0.3148 0.2537 0.3333 4.57e-05
29 3a01:F 61 50 0.3333 0.2951 0.3600 5.87e-05 3a01:B, 3lnq:A
30 5eea:G 63 51 0.2963 0.2540 0.3137 1.65e-04 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
31 3cmy:A 60 50 0.2963 0.2667 0.3200 2.13e-04
32 8osb:E 62 50 0.3333 0.2903 0.3600 2.24e-04
33 6e8c:A 135 50 0.2222 0.0889 0.2400 0.002 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 6e8c:A 135 49 0.2407 0.0963 0.2653 0.002 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 5hod:A 61 53 0.2963 0.2623 0.3019 0.003 5hod:D
36 1le8:A 53 38 0.2407 0.2453 0.3421 0.004 1akh:A, 1yrn:A
37 3l1p:A 147 43 0.3148 0.1156 0.3953 0.004 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
38 4egc:A 539 43 0.2407 0.0241 0.3023 0.008
39 3d1n:I 150 48 0.2593 0.0933 0.2917 0.010 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
40 8bx1:A 127 42 0.2963 0.1260 0.3810 0.014
41 9b8u:B 66 46 0.2593 0.2121 0.3043 0.025 9b8u:A, 9b8u:C, 9b8u:D
42 5wc9:A 136 53 0.3148 0.1250 0.3208 0.032 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
43 7xrc:C 134 44 0.2778 0.1119 0.3409 0.050 2xsd:C
44 1lfu:P 82 54 0.2778 0.1829 0.2778 0.16 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
45 8g8e:X 140 32 0.2407 0.0929 0.4062 0.17 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
46 8ik5:C 67 27 0.2222 0.1791 0.4444 0.44 8ike:C, 8ilw:C
47 1gt0:C 137 30 0.1667 0.0657 0.3000 1.8 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
48 4doz:A 557 38 0.1852 0.0180 0.2632 2.2 3ung:C, 3ur3:C
49 1akh:B 78 33 0.2222 0.1538 0.3636 2.6 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
50 1mnm:C 77 33 0.2222 0.1558 0.3636 3.0 1mnm:D
51 8ozh:C 405 33 0.1852 0.0247 0.3030 6.1 8ozh:G, 8ozh:K, 8ozj:G, 8ozj:K, 8ozp:G, 8ozq:G
52 8k40:A 448 25 0.1481 0.0179 0.3200 6.4 8k40:B, 8k41:A
53 1sdd:A 268 36 0.1481 0.0299 0.2222 8.1
54 4dfb:B 301 30 0.2222 0.0399 0.4000 8.5 5c4k:A, 5c4l:A, 5c4l:B, 6cd7:B, 4dfb:A, 4dfu:A, 4dfu:B, 4dt8:A, 4dt8:B, 4dt9:A, 4dt9:B, 4dta:A, 4dta:B, 4dtb:A, 4dtb:B, 4n57:A, 4n57:B, 3sg8:A, 3sg8:B, 3sg9:A, 3sg9:B
55 6m35:A 310 32 0.1296 0.0226 0.2188 8.7 6m35:B, 6m35:C, 6m35:D, 6m35:E, 6m35:F, 6m35:G, 6m35:H, 6m3x:A, 6m3x:B, 6m3x:C, 6m3x:D, 6m3x:E, 6m3x:F, 6m3x:G, 6m3x:H, 6m3x:I, 6m3x:J, 6m3x:K, 6m3x:L, 6m3x:M, 6m3x:N, 6m3x:O, 6m3x:P, 6m3x:Q, 6m3x:R, 6m3x:S, 6m3x:T, 6m3x:U, 6m3x:V, 6m3x:W, 6m3x:X
56 7l5a:A 477 53 0.2593 0.0294 0.2642 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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