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BioLiP
>protein
TVFEELKRYVGWGDGDERALRSLHGAAAPHFPRLAEEFYDRILGHEGARTALVGGESQVGHLKVTMIAWLDELLGGPWDE
AYWDRRYRIGRVHVRIGLPQHYMFGAMNVHRTGLARLAYERFHGDPPELERVRNALGKVLDLELAVMLHTYR

The query sequence (length=152) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ohe:F 155 152 1.0000 0.9806 1.0000 7.94e-109 5ohe:A, 5ohe:B, 5ohe:C, 5ohe:D, 5ohe:E, 5ohe:G, 5ohe:H, 5ohf:A, 5ohf:B, 5ohf:C, 5ohf:D, 5ohf:E, 5ohf:F, 5ohf:G, 5ohf:H, 6otd:A
2 2w31:A 152 152 0.3618 0.3618 0.3618 9.96e-20 2w31:B
3 8h17:A 157 137 0.2829 0.2739 0.3139 2.45e-12
4 1or4:A 169 142 0.2697 0.2426 0.2887 7.85e-12 1or4:B, 1or6:A, 1or6:B
5 4zvb:A 150 75 0.1447 0.1467 0.2933 0.94 4zva:A, 4zva:B, 4zvb:B, 4zvb:C, 4zvb:D
6 6m9a:C 157 72 0.1316 0.1274 0.2778 1.2 6i2z:A, 6i2z:B, 6m9a:A, 6m9a:B, 4uiq:A, 4uiq:B
7 6nrq:B 104 32 0.0658 0.0962 0.3125 1.4
8 8zfk:D 412 54 0.0855 0.0316 0.2407 2.3 8zfk:E, 8zfk:A, 8zfk:B, 8zfk:C
9 8k7x:A 673 81 0.1447 0.0327 0.2716 6.0 8k7y:A, 8k7y:E
10 1rrv:A 401 24 0.0724 0.0274 0.4583 6.7 1rrv:B
11 7ui4:A 413 32 0.0855 0.0315 0.4062 7.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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