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BioLiP
>protein
TVEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTNPAHNLSDAFGEKFGKDARKVTGMNNL
SCMEIDPSAALKDMNDMGALADLTGSIPGIDEALSFMEVMKHIKRQEQGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLE
KFGEITNKLGISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQ
EHNCKRCQARWKMQKKYLDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELED

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3sja:A 338 336 0.9936 0.9142 0.9196 0.0 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E
2 4xtr:B 311 317 0.9743 0.9743 0.9558 0.0 3b2e:A, 3b2e:D, 5bw8:B, 4pwx:A, 4pwx:B, 3vlc:A, 2woj:A, 2woj:B, 2woj:D, 4xtr:A, 4xvu:H, 4xvu:A, 4xvu:B, 4xvu:G, 4xwo:A, 4xwo:G, 4xwo:M, 4xwo:N, 4xwo:S, 4xwo:B, 4xwo:H, 4xwo:T, 3zs8:B, 3zs9:A, 3zs9:B
3 3a36:A 314 324 0.9582 0.9490 0.9198 0.0 3a37:A, 5bwk:N
4 3sjd:C 292 313 0.9260 0.9863 0.9201 0.0 3sjd:A, 3sjd:B, 2woj:C, 3zs8:A
5 3idq:A 272 309 0.8360 0.9559 0.8414 0.0
6 2woo:A 303 308 0.5627 0.5776 0.5682 5.33e-109 2woo:B, 2woo:C, 2woo:D, 2woo:E, 2woo:F
7 3ibg:A 300 314 0.5402 0.5600 0.5350 4.50e-106 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
8 8odu:A 291 299 0.5177 0.5533 0.5385 2.84e-102
9 3io3:A 230 309 0.5305 0.7174 0.5340 1.05e-101
10 3iqx:A 261 300 0.4952 0.5900 0.5133 7.72e-91 3iqw:A, 3iqw:B, 3iqx:B
11 6so5:A 313 321 0.4952 0.4920 0.4798 1.91e-90 7ru9:A, 7ru9:B, 7rua:A, 7rua:B, 7ruc:A, 7ruc:B
12 7spz:A 328 324 0.4695 0.4451 0.4506 1.00e-80 7spy:A
13 8hac:B 327 332 0.4759 0.4526 0.4458 3.50e-78 8hac:A
14 7sq0:A 306 314 0.4598 0.4673 0.4554 6.54e-78 7sq0:B
15 3zq6:B 288 284 0.3505 0.3785 0.3838 8.45e-50 3zq6:C
16 3zq6:D 307 310 0.3601 0.3648 0.3613 6.25e-47 3zq6:A
17 3ug7:A 317 297 0.3055 0.2997 0.3199 9.55e-43 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D
18 5zme:A 638 288 0.2733 0.1332 0.2951 5.20e-28 5zmf:A
19 5zme:A 638 338 0.3023 0.1473 0.2781 1.83e-25 5zmf:A
20 1ii0:B 553 261 0.2540 0.1429 0.3027 8.44e-28 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
21 1ii0:B 553 157 0.1447 0.0814 0.2866 9.78e-05 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
22 8elf:B 384 170 0.1350 0.1094 0.2471 7.10e-06 8elf:A
23 6bs3:A 330 259 0.1833 0.1727 0.2201 1.58e-05 6bs4:A, 6bs5:A
24 5if9:A 251 181 0.1640 0.2032 0.2818 0.002 5if9:B, 5ihp:A, 5ihp:B
25 8egk:B 355 59 0.0579 0.0507 0.3051 0.004
26 2bej:A 245 123 0.1029 0.1306 0.2602 0.007 2bek:A, 2bek:B, 2bek:C, 2bek:D
27 6iub:A 264 42 0.0547 0.0644 0.4048 0.041 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
28 3q9l:A 257 34 0.0547 0.0661 0.5000 0.085 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
29 5u1g:D 211 173 0.1511 0.2227 0.2717 0.099 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
30 6a20:A 395 214 0.1543 0.1215 0.2243 0.12 6a1z:A, 7d8v:A, 3gbj:B, 5zbr:B, 5zbr:A, 5zbr:C, 5zbs:B, 5zbs:A
31 2ynm:B 268 41 0.0547 0.0634 0.4146 0.13 2ynm:A
32 6bs3:B 355 193 0.1383 0.1211 0.2228 0.16 6bs4:B
33 6x91:A 592 192 0.1511 0.0794 0.2448 0.16 6x91:B, 6x91:C, 6x91:E, 6x91:F, 6x91:G
34 6x91:H 558 192 0.1511 0.0842 0.2448 0.17 6x91:D
35 5tvk:B 242 56 0.0643 0.0826 0.3571 0.38 3k9g:A, 5tvk:A
36 6riq:C 254 25 0.0418 0.0512 0.5200 0.51 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
37 5k5z:D 314 41 0.0579 0.0573 0.4390 0.56 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
38 3fwy:A 268 43 0.0547 0.0634 0.3953 0.57 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
39 4v02:A 244 36 0.0514 0.0656 0.4444 1.0 4v02:B, 4v03:A, 4v03:B
40 8pj1:1 588 44 0.0514 0.0272 0.3636 1.3 6fec:w, 2krb:A, 8oz0:I, 8pj2:1, 8pj3:1, 8pj5:1, 8pj6:1
41 1rlj:A 135 79 0.0675 0.1556 0.2658 1.9
42 3ixe:B 70 34 0.0322 0.1429 0.2941 6.1
43 8xxn:3B 536 34 0.0386 0.0224 0.3529 6.7 6zon:B, 6zp4:B, 6zvj:B
44 1g3q:A 237 78 0.0675 0.0886 0.2692 7.1 1g3r:A
45 2afh:E 289 34 0.0354 0.0381 0.3235 7.8 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
46 5e7p:A 719 28 0.0386 0.0167 0.4286 8.5 5e7p:B
47 8dgf:A 1541 189 0.1511 0.0305 0.2487 8.8 8dgf:B, 8dgf:C, 8dgf:D
48 8r9r:A 255 63 0.0611 0.0745 0.3016 9.1
49 4zdj:A 535 98 0.0772 0.0449 0.2449 9.3 4zdk:A, 4zdk:B
50 6nzj:A 273 40 0.0450 0.0513 0.3500 9.5 6nzj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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