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BioLiP
>protein
TVEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTNPAHNLSDAFGEKFGKDARKVTGMNNL
SCMEIDPSAALKDMNDGALADLTGSIPGIDEALSFMEVMKHIKRQETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGE
ITGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAEHNCKRCQARWKMQ
KKYLDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELED

The query sequence (length=297) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xtr:B 311 311 0.9966 0.9518 0.9518 0.0 3b2e:A, 3b2e:D, 5bw8:B, 4pwx:A, 4pwx:B, 3vlc:A, 2woj:A, 2woj:B, 2woj:D, 4xtr:A, 4xvu:H, 4xvu:A, 4xvu:B, 4xvu:G, 4xwo:A, 4xwo:G, 4xwo:M, 4xwo:N, 4xwo:S, 4xwo:B, 4xwo:H, 4xwo:T, 3zs8:B, 3zs9:A, 3zs9:B
2 3sja:A 338 336 0.9933 0.8728 0.8780 0.0 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E
3 3a36:A 314 323 0.9596 0.9076 0.8824 0.0 3a37:A, 5bwk:N
4 3sjd:C 292 306 0.9428 0.9589 0.9150 0.0 3sjd:A, 3sjd:B, 2woj:C, 3zs8:A
5 3idq:A 272 298 0.8653 0.9449 0.8624 0.0
6 2woo:A 303 302 0.5859 0.5743 0.5762 3.32e-107 2woo:B, 2woo:C, 2woo:D, 2woo:E, 2woo:F
7 3ibg:A 300 306 0.5657 0.5600 0.5490 3.86e-105 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
8 3io3:A 230 295 0.5556 0.7174 0.5593 8.02e-104
9 8odu:A 291 293 0.5421 0.5533 0.5495 4.51e-101
10 3iqx:A 261 288 0.5185 0.5900 0.5347 4.05e-93 3iqw:A, 3iqw:B, 3iqx:B
11 6so5:A 313 316 0.5017 0.4760 0.4715 6.42e-86 7ru9:A, 7ru9:B, 7rua:A, 7rua:B, 7ruc:A, 7ruc:B
12 7sq0:A 306 303 0.4848 0.4706 0.4752 4.94e-79 7sq0:B
13 7spz:A 328 319 0.4882 0.4421 0.4545 2.44e-78 7spy:A
14 8hac:B 327 328 0.4949 0.4495 0.4482 3.93e-76 8hac:A
15 3zq6:B 288 278 0.3670 0.3785 0.3921 1.60e-50 3zq6:C
16 3zq6:D 307 297 0.3569 0.3453 0.3569 8.43e-47 3zq6:A
17 3ug7:A 317 284 0.2963 0.2776 0.3099 2.14e-44 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D
18 5zme:A 638 289 0.2963 0.1379 0.3045 6.76e-29 5zmf:A
19 5zme:A 638 333 0.3064 0.1426 0.2733 8.19e-25 5zmf:A
20 1ii0:B 553 254 0.2660 0.1429 0.3110 1.39e-28 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
21 1ii0:B 553 293 0.2256 0.1212 0.2287 1.79e-04 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
22 8elf:B 384 200 0.1717 0.1328 0.2550 3.94e-05 8elf:A
23 6bs3:A 330 236 0.1785 0.1606 0.2246 8.82e-05 6bs4:A, 6bs5:A
24 2bej:A 245 120 0.1111 0.1347 0.2750 0.001 2bek:A, 2bek:B, 2bek:C, 2bek:D
25 5if9:A 251 128 0.1313 0.1554 0.3047 0.001 5if9:B, 5ihp:A, 5ihp:B
26 6bs3:B 355 208 0.1549 0.1296 0.2212 0.002 6bs4:B
27 8egk:B 355 56 0.0572 0.0479 0.3036 0.005
28 6iub:A 264 42 0.0572 0.0644 0.4048 0.038 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
29 3q9l:A 257 34 0.0572 0.0661 0.5000 0.076 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
30 2ynm:B 268 41 0.0572 0.0634 0.4146 0.12 2ynm:A
31 5tvk:B 242 56 0.0673 0.0826 0.3571 0.34 3k9g:A, 5tvk:A
32 5u1g:D 211 96 0.1077 0.1517 0.3333 0.44 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
33 5k5z:D 314 41 0.0606 0.0573 0.4390 0.47 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
34 6riq:C 254 25 0.0438 0.0512 0.5200 0.48 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
35 3fwy:A 268 43 0.0572 0.0634 0.3953 0.50 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
36 4v02:A 244 36 0.0539 0.0656 0.4444 0.88 4v02:B, 4v03:A, 4v03:B
37 6hzz:B 516 84 0.0842 0.0484 0.2976 1.9 6hzz:A, 6i01:A, 6i01:B, 6i02:A, 6i02:B
38 3ixe:B 70 24 0.0303 0.1286 0.3750 6.2
39 6a20:A 395 44 0.0505 0.0380 0.3409 6.7 6a1z:A, 7d8v:A, 3gbj:B, 5zbr:B, 5zbr:A, 5zbr:C, 5zbs:B, 5zbs:A
40 1g3q:A 237 78 0.0707 0.0886 0.2692 6.7 1g3r:A
41 2afh:E 289 34 0.0370 0.0381 0.3235 6.8 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
42 5e7p:A 719 28 0.0404 0.0167 0.4286 8.0 5e7p:B
43 4z6k:A 345 140 0.1145 0.0986 0.2429 8.3 4z6k:B, 4z6k:C, 4z6k:D
44 2xhi:A 316 51 0.0438 0.0411 0.2549 8.8 7ayy:AAA, 7ayy:BBB, 7ayy:CCC, 7ayy:DDD, 7ayy:EEE, 1ebm:A, 1fn7:A, 1hu0:A, 2i5w:A, 3ih7:A, 3ktu:A, 1lwv:A, 1lww:A, 1lwy:A, 1m3h:A, 1m3q:A, 1n39:A, 1n3a:A, 1n3c:A, 2nob:A, 2noe:A, 2nof:A, 2noh:A, 2noi:A, 2nol:A, 2noz:A, 6rlw:AAA, 6rlw:BBB, 6rlw:CCC, 6rlw:DDD, 6rlw:EEE, 6w0m:A, 6w0r:A, 6w13:A, 1yqk:A, 1yql:A, 1yqm:A, 1yqr:A
45 8r9r:A 255 63 0.0640 0.0745 0.3016 9.0
46 6nzj:A 273 40 0.0471 0.0513 0.3500 9.0 6nzj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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