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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TVEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMNNL
SCMEIDPSAALKDMNDMAVSRALADLTGSIPGIDEALSFMEVMKHIKRQETFDTVIFDTAPTGHTLRFLQLPNTLSKLLE
KFGEIVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENCKRCQ
ARWKMQKKYLDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYEL

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xtr:B 311 308 0.9900 0.9582 0.9675 0.0 3b2e:A, 3b2e:D, 5bw8:B, 4pwx:A, 4pwx:B, 3vlc:A, 2woj:A, 2woj:B, 2woj:D, 4xtr:A, 4xvu:H, 4xvu:A, 4xvu:B, 4xvu:G, 4xwo:A, 4xwo:G, 4xwo:M, 4xwo:N, 4xwo:S, 4xwo:B, 4xwo:H, 4xwo:T, 3zs8:B, 3zs9:A, 3zs9:B
2 3sja:A 338 334 0.9967 0.8876 0.8982 0.0 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E
3 3sjd:C 292 311 0.9302 0.9589 0.9003 0.0 3sjd:A, 3sjd:B, 2woj:C, 3zs8:A
4 3a36:A 314 326 0.9535 0.9140 0.8804 0.0 3a37:A, 5bwk:N
5 3idq:A 272 302 0.8505 0.9412 0.8477 2.19e-179
6 2woo:A 303 302 0.5914 0.5875 0.5894 2.02e-111 2woo:B, 2woo:C, 2woo:D, 2woo:E, 2woo:F
7 3ibg:A 300 309 0.5581 0.5600 0.5437 3.92e-105 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
8 3io3:A 230 300 0.5482 0.7174 0.5500 5.22e-103
9 8odu:A 291 297 0.5382 0.5567 0.5455 7.47e-101
10 3iqx:A 261 295 0.5183 0.5977 0.5288 3.80e-93 3iqw:A, 3iqw:B, 3iqx:B
11 6so5:A 313 316 0.4950 0.4760 0.4715 1.03e-86 7ru9:A, 7ru9:B, 7rua:A, 7rua:B, 7ruc:A, 7ruc:B
12 7sq0:A 306 308 0.4817 0.4739 0.4708 2.12e-80 7sq0:B
13 7spz:A 328 319 0.4751 0.4360 0.4483 6.57e-80 7spy:A
14 8hac:B 327 332 0.4950 0.4557 0.4488 1.43e-76 8hac:A
15 3zq6:B 288 277 0.3654 0.3819 0.3971 7.56e-50 3zq6:C
16 3zq6:D 307 297 0.3654 0.3583 0.3704 1.11e-46 3zq6:A
17 3ug7:A 317 284 0.3056 0.2902 0.3239 4.94e-43 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D
18 1ii0:B 553 261 0.2724 0.1483 0.3142 2.97e-29 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
19 1ii0:B 553 295 0.2392 0.1302 0.2441 2.62e-06 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
20 5zme:A 638 289 0.2890 0.1364 0.3010 2.37e-27 5zmf:A
21 5zme:A 638 338 0.3156 0.1489 0.2811 2.06e-24 5zmf:A
22 8elf:B 384 184 0.1628 0.1276 0.2663 1.24e-05 8elf:A
23 6bs3:A 330 239 0.1794 0.1636 0.2259 9.30e-05 6bs4:A, 6bs5:A
24 5if9:A 251 182 0.1761 0.2112 0.2912 2.41e-04 5if9:B, 5ihp:A, 5ihp:B
25 2bej:A 245 169 0.1429 0.1755 0.2544 0.001 2bek:A, 2bek:B, 2bek:C, 2bek:D
26 6bs3:B 355 171 0.1262 0.1070 0.2222 0.003 6bs4:B
27 8egk:B 355 56 0.0565 0.0479 0.3036 0.006
28 6iub:A 264 42 0.0598 0.0682 0.4286 0.008 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
29 2ynm:B 268 41 0.0598 0.0672 0.4390 0.031 2ynm:A
30 3q9l:A 257 34 0.0565 0.0661 0.5000 0.074 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
31 5tvk:B 242 56 0.0698 0.0868 0.3750 0.076 3k9g:A, 5tvk:A
32 5k5z:D 314 41 0.0631 0.0605 0.4634 0.16 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
33 3fwy:A 268 43 0.0598 0.0672 0.4186 0.16 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
34 5u1g:D 211 98 0.1096 0.1564 0.3367 0.19 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
35 6riq:C 254 25 0.0432 0.0512 0.5200 0.44 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
36 8bx8:C 3947 84 0.0698 0.0053 0.2500 0.78 7k58:C, 7k5b:C, 7kek:C
37 4v02:A 244 36 0.0532 0.0656 0.4444 0.84 4v02:B, 4v03:A, 4v03:B
38 6a20:A 395 209 0.1561 0.1190 0.2249 1.1 6a1z:A, 7d8v:A, 3gbj:B, 5zbr:B, 5zbr:A, 5zbr:C, 5zbs:B, 5zbs:A
39 2afh:E 289 34 0.0399 0.0415 0.3529 1.7 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
40 8r9r:A 255 63 0.0664 0.0784 0.3175 2.0
41 1g3q:A 237 78 0.0731 0.0928 0.2821 2.2 1g3r:A
42 6nzj:A 273 40 0.0498 0.0549 0.3750 2.2 6nzj:B
43 3cwq:A 206 33 0.0498 0.0728 0.4545 3.1 3cwq:B
44 1ion:A 243 47 0.0565 0.0700 0.3617 5.2
45 3ixe:B 70 24 0.0299 0.1286 0.3750 6.3
46 5b1s:A 294 34 0.0399 0.0408 0.3529 6.8 5b1s:B, 5b1s:C, 5b1s:D, 3bwc:A, 3bwc:B, 5y4p:A, 5y4p:B, 5y4p:C, 5y4p:D, 5y4q:A, 5y4q:B, 5y4q:C, 5y4q:D, 4yuv:A, 4yuv:B, 4yuw:A, 4yuw:B, 4yux:A, 4yux:B, 4yuy:A, 4yuy:B, 4yuz:A, 4yuz:B, 4yuz:C, 4yuz:D, 4yv0:A, 4yv0:B, 4yv0:C, 4yv0:D, 4yv1:A, 4yv1:B, 4yv1:C, 4yv1:D, 4yv2:A, 4yv2:B
47 5e7p:A 719 28 0.0399 0.0167 0.4286 7.5 5e7p:B
48 3kjg:A 254 45 0.0565 0.0669 0.3778 8.2 3kjg:B, 3kjh:A, 3kji:A, 3kji:B
49 7dut:A 220 44 0.0498 0.0682 0.3409 8.6 7dv3:A, 7dv3:B, 7dwr:A, 7dwr:D, 7dwr:B, 7dwr:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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