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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TVEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMNNL
SCMEIDPSAALGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKDISGKLNELK
ANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLD
QIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELED

The query sequence (length=292) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3sjd:C 292 292 1.0000 1.0000 1.0000 0.0 3sjd:A, 3sjd:B, 2woj:C, 3zs8:A
2 3sja:A 338 336 0.9966 0.8609 0.8661 0.0 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E
3 3a36:A 314 314 0.9863 0.9172 0.9172 0.0 3a37:A, 5bwk:N
4 4xtr:B 311 315 0.9795 0.9196 0.9079 0.0 3b2e:A, 3b2e:D, 5bw8:B, 4pwx:A, 4pwx:B, 3vlc:A, 2woj:A, 2woj:B, 2woj:D, 4xtr:A, 4xvu:H, 4xvu:A, 4xvu:B, 4xvu:G, 4xwo:A, 4xwo:G, 4xwo:M, 4xwo:N, 4xwo:S, 4xwo:B, 4xwo:H, 4xwo:T, 3zs8:B, 3zs9:A, 3zs9:B
5 3idq:A 272 288 0.8973 0.9632 0.9097 0.0
6 3io3:A 230 290 0.5685 0.7217 0.5724 4.07e-105
7 2woo:A 303 310 0.5856 0.5644 0.5516 3.73e-101 2woo:B, 2woo:C, 2woo:D, 2woo:E, 2woo:F
8 3ibg:A 300 313 0.5582 0.5433 0.5208 2.59e-99 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
9 8odu:A 291 299 0.5445 0.5464 0.5318 7.15e-96
10 3iqx:A 261 281 0.5342 0.5977 0.5552 1.62e-95 3iqw:A, 3iqw:B, 3iqx:B
11 6so5:A 313 323 0.5171 0.4824 0.4675 1.82e-85 7ru9:A, 7ru9:B, 7rua:A, 7rua:B, 7ruc:A, 7ruc:B
12 7sq0:A 306 308 0.4795 0.4575 0.4545 2.96e-77 7sq0:B
13 7spz:A 328 326 0.4795 0.4268 0.4294 1.66e-75 7spy:A
14 8hac:B 327 329 0.4966 0.4434 0.4407 2.00e-73 8hac:A
15 3zq6:B 288 286 0.3699 0.3750 0.3776 9.98e-46 3zq6:C
16 3zq6:D 307 306 0.3664 0.3485 0.3497 5.30e-42 3zq6:A
17 3ug7:A 317 293 0.3185 0.2934 0.3174 5.95e-41 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D
18 1ii0:B 553 256 0.2705 0.1429 0.3086 1.31e-26 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
19 1ii0:B 553 295 0.2500 0.1320 0.2475 0.001 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
20 5zme:A 638 290 0.2842 0.1301 0.2862 1.93e-24 5zmf:A
21 5zme:A 638 340 0.3082 0.1411 0.2647 2.01e-22 5zmf:A
22 6bs3:A 330 154 0.1199 0.1061 0.2273 1.95e-05 6bs4:A, 6bs5:A
23 8elf:B 384 183 0.1507 0.1146 0.2404 3.29e-04 8elf:A
24 6iub:A 264 42 0.0616 0.0682 0.4286 0.008 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
25 5if9:A 251 123 0.1301 0.1514 0.3089 0.011 5if9:B, 5ihp:A, 5ihp:B
26 2ynm:B 268 41 0.0616 0.0672 0.4390 0.031 2ynm:A
27 2bej:A 245 44 0.0582 0.0694 0.3864 0.034 2bek:A, 2bek:B, 2bek:C, 2bek:D
28 5tvk:B 242 56 0.0719 0.0868 0.3750 0.067 3k9g:A, 5tvk:A
29 3q9l:A 257 34 0.0582 0.0661 0.5000 0.073 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
30 8egk:B 355 57 0.0616 0.0507 0.3158 0.11
31 5k5z:D 314 41 0.0651 0.0605 0.4634 0.12 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
32 3fwy:A 268 43 0.0616 0.0672 0.4186 0.16 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
33 5u1g:D 211 53 0.0719 0.0995 0.3962 0.35 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
34 6riq:C 254 25 0.0445 0.0512 0.5200 0.40 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
35 4v02:A 244 36 0.0548 0.0656 0.4444 0.75 4v02:B, 4v03:A, 4v03:B
36 4cql:I 251 101 0.0788 0.0916 0.2277 1.1 4cql:A, 4cql:D, 4cql:E, 4cql:H, 4cql:L, 4cql:M, 4cql:P, 4cqm:A, 4cqm:D, 4cqm:E, 4cqm:H, 4cqm:I, 4cqm:L, 4cqm:M, 4cqm:P, 2pd6:A, 2pd6:B, 2pd6:C, 2pd6:D
37 6bs3:B 355 179 0.1301 0.1070 0.2123 1.2 6bs4:B
38 2afh:E 289 34 0.0411 0.0415 0.3529 1.6 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
39 1g3q:A 237 78 0.0753 0.0928 0.2821 1.6 1g3r:A
40 6nzj:A 273 40 0.0514 0.0549 0.3750 2.0 6nzj:B
41 8r9r:A 255 63 0.0685 0.0784 0.3175 2.2
42 6g2g:B 273 86 0.0753 0.0806 0.2558 2.4 6g2g:A
43 3cwq:A 206 33 0.0514 0.0728 0.4545 3.3 3cwq:B
44 9bhw:B 299 185 0.1336 0.1304 0.2108 3.3 9bhw:C
45 1ion:A 243 47 0.0582 0.0700 0.3617 4.3
46 7qqa:A 273 111 0.0959 0.1026 0.2523 4.9 7qqa:B, 7qqa:C, 7qqa:D
47 1q6y:A 417 71 0.0651 0.0456 0.2676 5.1 1pt5:A, 1pt5:B, 1pt8:A, 1pt8:B, 1q7e:A
48 5b1s:A 294 34 0.0411 0.0408 0.3529 5.4 5b1s:B, 5b1s:C, 5b1s:D, 3bwc:A, 3bwc:B, 5y4p:A, 5y4p:B, 5y4p:C, 5y4p:D, 5y4q:A, 5y4q:B, 5y4q:C, 5y4q:D, 4yuv:A, 4yuv:B, 4yuw:A, 4yuw:B, 4yux:A, 4yux:B, 4yuy:A, 4yuy:B, 4yuz:A, 4yuz:B, 4yuz:C, 4yuz:D, 4yv0:A, 4yv0:B, 4yv0:C, 4yv0:D, 4yv1:A, 4yv1:B, 4yv1:C, 4yv1:D, 4yv2:A, 4yv2:B
49 8q5t:A 280 131 0.0993 0.1036 0.2214 5.7 8q50:A, 8q5t:B, 8q5t:C, 8q5t:D, 8q5v:A, 8q5v:B, 8q5v:C, 8q5v:D, 8q5v:E, 8q5v:F, 8q5v:G, 8q5v:H, 8q5v:J, 8q5v:K, 8q5v:L, 8q5v:M
50 8oie:D 272 131 0.1027 0.1103 0.2290 5.8 8oie:E, 8oie:I, 8oie:J
51 3ixe:B 70 34 0.0342 0.1429 0.2941 5.9
52 7dut:A 220 114 0.0959 0.1273 0.2456 6.2 7dv3:A, 7dv3:B, 7dwr:A, 7dwr:D, 7dwr:B, 7dwr:C
53 3kjg:A 254 45 0.0582 0.0669 0.3778 7.1 3kjg:B, 3kjh:A, 3kji:A, 3kji:B
54 5e7p:A 719 28 0.0411 0.0167 0.4286 7.4 5e7p:B
55 7s01:D 631 134 0.1164 0.0539 0.2537 7.9 7s00:F
56 6a20:A 395 44 0.0514 0.0380 0.3409 8.8 6a1z:A, 7d8v:A, 3gbj:B, 5zbr:B, 5zbr:A, 5zbr:C, 5zbs:B, 5zbs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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