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BioLiP
>protein
TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5etl:D 160 158 1.0000 0.9437 0.9557 7.70e-108 6an4:A, 6an6:A, 6an6:B, 1dy3:A, 1eqm:A, 5etk:A, 5etl:A, 5etl:B, 5etl:C, 5etm:A, 5etn:A, 5eto:A, 5etp:A, 1ex8:A, 4f7v:A, 1f9h:A, 1g4c:B, 3hd1:A, 3hd2:A, 1hq2:A, 3hsd:A, 3hsd:B, 3hsg:A, 3ht0:A, 3ilj:A, 3ilo:A, 3ip0:A, 7kdo:A, 7kdr:A, 3kuh:A, 4m5g:A, 4m5h:A, 4m5i:A, 4m5j:A, 4m5k:A, 4m5l:A, 4m5m:A, 4m5n:A, 4m5n:B, 1q0n:A, 1rao:A, 1rb0:A, 1rtz:A, 1ru1:A, 1ru1:B, 1ru2:A, 8sif:A, 1tmj:A, 1tmm:A, 1tmm:B, 3ud5:A, 3ude:A, 3udv:A
2 2qx0:A 159 155 0.6159 0.5849 0.6000 7.80e-62 2qx0:B
3 1cbk:A 160 154 0.5563 0.5250 0.5455 4.77e-58 1cbk:B
4 8sk1:A 162 134 0.3576 0.3333 0.4030 2.33e-27 8sk1:B
5 3qbc:B 161 139 0.3377 0.3168 0.3669 1.22e-25 4ad6:A, 4ad6:B, 4crj:A, 4cwb:A, 4cyu:A, 4cyu:B, 4cyu:C, 4cyu:D, 5etq:A, 5etq:B, 5etr:B, 5etr:A, 5ets:B, 5ets:A, 5ett:B, 5ett:A, 5etv:A, 3qbc:A
6 8sl9:A 422 134 0.3046 0.1090 0.3433 8.92e-19 4pzv:A
7 2bmb:A 513 135 0.3046 0.0897 0.3407 1.51e-17
8 3mco:A 397 132 0.2980 0.1134 0.3409 1.56e-16 3mcn:B, 3mco:B
9 3mcm:A 368 122 0.2715 0.1114 0.3361 9.79e-15 3mcn:A
10 7weg:B 96 24 0.0795 0.1250 0.5000 0.54 7weg:A
11 7aor:ae 574 35 0.0861 0.0226 0.3714 0.81
12 8jfk:B 1033 34 0.0993 0.0145 0.4412 1.0 8jfk:N, 8jfk:J, 8jfk:F, 8jfl:B, 8jfl:N, 8jfl:F, 8jfl:J, 8xya:B
13 7pc5:A 405 24 0.0795 0.0296 0.5000 2.5
14 5w5j:B 257 106 0.1987 0.1167 0.2830 3.7 5ar8:A, 5w5j:A
15 6rfl:I 773 55 0.1258 0.0246 0.3455 7.3 7aof:I, 8c8h:I
16 7bqo:A 451 42 0.1060 0.0355 0.3810 7.5
17 7sjr:B 802 26 0.0795 0.0150 0.4615 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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