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BioLiP
>protein
TVAAYNLTWKSTNFKTILEWEPKPVNQVYTVQISTKSGDWKSKCFYTTDTECDLTDEIVKDVKQTYLARVFSYPAGNVES
TGSAGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWKTAKTNT
NEFLIDVCFSVQAVIPSRTVNRKSTDSPVEC

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ela:T 191 191 1.0000 1.0000 1.0000 3.77e-141
2 3dgc:R 202 152 0.2304 0.2178 0.2895 2.25e-07
3 6weo:7 201 153 0.2199 0.2090 0.2745 9.77e-05 6weo:F, 6weo:M, 6weo:V
4 8gzh:C 1052 64 0.0995 0.0181 0.2969 2.0 8gzg:C
5 7jve:B 251 65 0.0942 0.0717 0.2769 2.4 7jve:C, 7jve:F
6 2z1a:A 507 72 0.1047 0.0394 0.2778 2.5
7 8xr6:Q 143 99 0.1518 0.2028 0.2929 5.4 8xr6:q
8 4dch:A 434 76 0.0942 0.0415 0.2368 10.0 4ise:A, 4isf:A, 4isg:A, 5v4w:A, 5v4x:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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