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BioLiP
>protein
TTYTIKSGDTCYAISQARGISLSDFESWNAGIDCNNLQIGQVVCVS

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pxv:A 47 46 1.0000 0.9787 1.0000 1.72e-28 4pxv:D, 5ylg:A, 5ylg:C
2 4b9h:A 189 46 0.3696 0.0899 0.3696 0.095
3 4bts:AH 129 38 0.2826 0.1008 0.3421 1.6 4bts:BH, 4bts:CH, 4bts:DH, 4v5o:AH, 4v5o:BH
4 8ekk:A 533 29 0.2391 0.0206 0.3793 1.7 8ekk:B, 8ekk:C, 8ekk:D, 8ekk:E, 8ekk:F, 8ekk:G, 8ekl:A, 8ekl:B, 8ekl:C, 8ekl:D, 8ekl:E, 8ekl:F, 8ekl:G
5 7vcm:A 371 14 0.2174 0.0270 0.7143 2.1 7pvc:A, 7vcm:B
6 5xxz:B 1310 23 0.2174 0.0076 0.4348 2.2
7 5xya:A 1358 23 0.2174 0.0074 0.4348 2.3 5xxz:A
8 7edd:A 1394 23 0.2174 0.0072 0.4348 2.3 5xyr:A
9 6vjb:A 1346 23 0.2174 0.0074 0.4348 2.3
10 7m5x:A 1000 40 0.2826 0.0130 0.3250 2.5 7fjp:B, 7fjq:A, 8ien:P, 7m5y:A
11 8ieo:P 1031 40 0.2826 0.0126 0.3250 2.5 8iem:P
12 7vpk:A 1055 40 0.2826 0.0123 0.3250 2.5 8iek:P, 8ies:P, 7m5v:A, 7n70:A, 7n72:A, 7n73:A, 7n74:A, 7n77:A, 7n78:A, 7vpi:A, 7vpj:A, 7vpl:A
13 4hqs:A 135 19 0.1739 0.0593 0.4211 2.8
14 5i2h:A 335 22 0.1522 0.0209 0.3182 4.0 5i2h:B
15 6klo:A 368 29 0.2391 0.0299 0.3793 4.6 6klo:B, 6klo:C, 6klo:D, 6klo:E, 6klo:F, 6klo:G, 6klx:A, 6klx:B, 6klx:C, 6klx:D, 6klx:E, 6klx:F, 6klx:G
16 2vbc:A 600 21 0.2391 0.0183 0.5238 5.2 2jlr:A, 2jls:A, 2jlu:A, 2jlu:B, 2jlv:A, 2jlv:B, 2jlw:A, 2jlw:B, 2jlx:A, 2jlx:B, 2jly:A, 2jly:B, 2jlz:A, 2jlz:B, 2whx:A, 2wzq:A, 5xc6:A, 5xc6:B, 5yvj:B
17 8wqj:A 472 33 0.2609 0.0254 0.3636 5.4 8wqj:B
18 6xe6:A 826 14 0.1739 0.0097 0.5714 6.2
19 4j3r:A 372 19 0.1739 0.0215 0.4211 6.8 6gsg:A, 4j3p:A, 4j3q:A, 4j3q:B, 5or3:A, 5or3:B, 5or3:C, 5or3:D, 5or4:A, 5or4:B, 5or4:C, 5or4:D
20 7f7k:B 310 23 0.1957 0.0290 0.3913 8.8 7f7k:A, 7f7l:A, 7f7l:B, 7f7m:A, 7f7m:B, 7w1w:A, 7w1w:B, 7w1x:A, 7w1x:B
21 2okc:B 426 15 0.1739 0.0188 0.5333 9.0 2okc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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