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BioLiP
>protein
TTYAFRVARPEDVEAIAAIDGSFTTGTVFQVAVAPDGFTLREVAVDPPLVKVFPEDDGSGDRRTYVAVGAGGAVAGFTAV
SYTPWNGRLTIEDIEVAPGHRGRGIGRGLMERAADFARERGAGHLWLEVTNVNAPAIHAYLRLGFTFCGLDTALYLGTES
EGEQALYMSMPC

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ypv:A 172 172 1.0000 1.0000 1.0000 9.98e-125 7ypu:A, 7ypu:B, 7ypu:C, 7ypu:D, 7ypu:E, 7ypu:F, 7ypu:G, 7ypu:H, 7ypv:B, 7ypv:C, 7ypv:D, 7ypv:E, 7ypv:F, 7ypv:G, 7ypv:H
2 3pp9:A 176 169 0.2558 0.2500 0.2604 3.31e-11 3pp9:B, 3pp9:C
3 2bei:A 156 94 0.1977 0.2179 0.3617 1.15e-08 2q4v:A
4 2cnm:A 151 115 0.2151 0.2450 0.3217 2.10e-08 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
5 1tiq:A 173 73 0.1395 0.1387 0.3288 6.15e-07 1tiq:B
6 3dr8:A 173 81 0.1628 0.1618 0.3457 2.09e-05 3dr8:B
7 2b4b:B 170 102 0.1686 0.1706 0.2843 7.62e-05 2b3v:A, 2b4b:A, 2b4d:A, 2b4d:B, 2b58:A, 3bj7:A, 3bj7:B, 3bj7:C, 3bj7:D, 3bj8:A, 3bj8:B, 3bj8:C, 3bj8:D, 2fxf:A, 2fxf:B, 2jev:A, 2jev:B
8 7wx5:A 288 66 0.1163 0.0694 0.3030 8.43e-05 7wx6:A, 7wx7:A
9 6wqc:A 293 66 0.1279 0.0751 0.3333 9.17e-05 6wqb:A
10 2ge3:A 164 107 0.2035 0.2134 0.3271 9.38e-05 2ge3:B, 2ge3:C
11 2i79:A 171 148 0.2151 0.2164 0.2500 1.16e-04 2i79:B, 2i79:C, 2i79:D, 2i79:E, 2i79:F
12 5hmn:B 159 75 0.1279 0.1384 0.2933 2.60e-04 5hmn:A, 5hmn:C, 5hmn:E, 5hmn:F
13 6e1x:C 176 100 0.1512 0.1477 0.2600 3.16e-04 5cnp:B, 5cnp:D, 5cnp:F, 6cx8:A, 6cx8:B, 6cx8:C, 6cx8:D, 6cx8:E, 6cx8:F, 6e1x:A, 6e1x:B, 6e1x:D, 4mhd:A, 4mhd:B, 4mhd:C, 4mi4:A, 4mi4:B, 4mi4:C, 4ncz:A, 4ncz:C, 4ncz:B, 4r57:A, 4r57:B, 4r57:C, 4r57:D, 4r57:E, 4r57:F, 4r57:G, 4r57:H, 4r57:I, 4r57:J, 4r57:K, 4r57:L, 4r87:A, 4r87:B, 4r87:C, 4r87:D, 4r87:E, 4r87:F, 4r87:G, 4r87:H, 4r87:I, 4r87:J, 4r87:K, 4r87:L, 5ug4:A, 5ug4:B, 5ug4:C, 4ygo:A, 4ygo:C, 4ygo:D, 4ygo:E
14 6z00:A 156 72 0.1163 0.1282 0.2778 8.07e-04 6yzz:A, 6z00:B
15 6zmp:A 190 143 0.2500 0.2263 0.3007 8.55e-04 6zmp:B
16 2q0y:A 153 85 0.1802 0.2026 0.3647 0.001
17 5jph:B 144 61 0.1163 0.1389 0.3279 0.001 5jph:A, 5jph:C
18 6nbe:N 186 59 0.1395 0.1290 0.4068 0.002 6nas:N, 6nbw:N
19 7l1k:A 149 52 0.1047 0.1208 0.3462 0.005
20 4ua3:B 193 58 0.0988 0.0881 0.2931 0.006 4ua3:A
21 8g0l:A 158 108 0.1628 0.1772 0.2593 0.007 7stx:A, 6vp9:A
22 2j8m:A 171 87 0.1628 0.1637 0.3218 0.010 2bl1:A, 2j8m:B, 2j8r:A, 2j8r:B
23 5c88:A 158 99 0.1628 0.1772 0.2828 0.011 6ag4:A, 6ag5:A, 5c88:B, 4lx9:A, 4r3k:A, 4r3l:A, 2x7b:A
24 7daj:B 150 56 0.1047 0.1200 0.3214 0.016 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
25 6bvc:A 154 101 0.1453 0.1623 0.2475 0.023 1bo4:A, 1bo4:B
26 8a9n:A 150 70 0.1047 0.1200 0.2571 0.024 8a9n:B, 8a9o:A, 8a9o:B
27 4pv6:G 154 88 0.1395 0.1558 0.2727 0.039 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
28 2bsw:A 145 79 0.1221 0.1448 0.2658 0.055 2jdc:A, 2jdd:A
29 1ghe:B 171 63 0.1395 0.1404 0.3810 0.080 1ghe:A, 1j4j:A, 1j4j:B
30 4kub:A 160 88 0.1395 0.1500 0.2727 0.083 4klv:A, 4klw:A, 4kor:A, 4kos:A, 4kot:A, 4kou:A, 4kov:A, 4kow:A, 4kox:A, 4koy:A, 4l89:A, 4l8a:A, 4m3s:A, 4oad:A, 4oae:A, 3pgp:A, 5vd6:A, 5vdb:A
31 5wje:A 159 84 0.1163 0.1258 0.2381 0.084 5wjd:A
32 1i1d:D 161 94 0.1221 0.1304 0.2234 0.13 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
33 1wwz:A 157 86 0.1395 0.1529 0.2791 0.14 1wwz:B
34 4jwp:A 165 81 0.1628 0.1697 0.3457 0.14
35 3mgd:B 154 61 0.1047 0.1169 0.2951 0.16 3mgd:A
36 6d72:B 176 106 0.1570 0.1534 0.2547 0.16 6d72:A
37 3wr7:A 170 96 0.1628 0.1647 0.2917 0.17 4r9m:A, 3wr7:C, 3wr7:B, 3wr7:D
38 2pr1:A 152 29 0.0756 0.0855 0.4483 0.22 2pr1:B
39 8iyo:D 163 74 0.1105 0.1166 0.2568 0.22 8iyo:A, 8iyo:B, 8iyo:C
40 3owc:A 172 82 0.1628 0.1628 0.3415 0.28 3owc:B
41 4my0:C 392 69 0.1221 0.0536 0.3043 0.28 4my0:A, 4my0:E, 4my0:B, 4my0:D, 4my0:F
42 7ovv:B 196 54 0.1105 0.0969 0.3519 0.32 7ovv:A
43 7zkt:B 202 54 0.1105 0.0941 0.3519 0.36 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
44 6vfn:A 167 92 0.1337 0.1377 0.2500 0.49 6vfn:F, 6vfn:B, 6vfn:C, 6vfn:D, 6vfn:E, 6vfn:H, 6vfn:I, 6vfn:J, 6vfn:G, 6vfn:L, 6vfn:K
45 4qvt:D 146 50 0.0988 0.1164 0.3400 0.51 2pdo:H, 2pdo:B, 4qvt:A, 4qvt:B, 4qvt:C, 4qvt:E, 4qvt:F, 4qvt:G, 4qvt:H
46 4zm6:A 844 61 0.1163 0.0237 0.3279 0.60 4zm6:B
47 4zm6:A 844 55 0.0988 0.0201 0.3091 9.8 4zm6:B
48 6yug:A 143 121 0.1570 0.1888 0.2231 0.74 6yug:B
49 5dwn:A 181 85 0.1453 0.1381 0.2941 0.97 5dwn:B, 5dwn:C, 5dwn:D
50 5xxr:A 123 33 0.0640 0.0894 0.3333 1.0 5xxr:B, 5xxs:A, 5xxs:B
51 7ciw:A 216 79 0.1395 0.1111 0.3038 1.2 7civ:A, 7cix:A
52 4jxr:B 185 91 0.1512 0.1405 0.2857 1.6
53 5f47:B 152 86 0.1105 0.1250 0.2209 2.5 5f47:A, 5f48:A, 5f48:B, 5f49:A, 5f49:B, 5f49:C, 5f49:D, 5u08:A, 5u08:B, 5u08:C, 5u08:D
54 1yvk:A 152 88 0.1221 0.1382 0.2386 2.6 1yvk:B, 1yvk:C, 1yvk:D
55 6de6:A 689 91 0.1337 0.0334 0.2527 3.8
56 6de6:B 652 91 0.1337 0.0353 0.2527 3.9
57 4qc6:A 179 49 0.0930 0.0894 0.3265 4.7 4qc6:B
58 5wph:A 179 153 0.2326 0.2235 0.2614 5.6 6m7g:A, 6m7g:C, 6m7g:B, 6m7g:D, 6m7g:E, 6m7g:F, 6m7g:L, 5wph:B
59 8if8:B 620 66 0.0988 0.0274 0.2576 6.1 8if8:C
60 7kyj:B 194 25 0.0756 0.0670 0.5200 9.1 6edd:A, 6edd:B, 6edv:A, 7kpp:A, 7kpp:B, 7kps:A, 7kps:B, 7kye:A, 7kyj:A
61 5yge:A 169 75 0.1279 0.1302 0.2933 9.4 6add:A, 6add:B, 5yge:B, 5yo2:A, 5yo2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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